MapAlignmentEvaluationAlgorithm.h

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// $Maintainer: Timo Sachsenberg $
// $Authors: Katharina Albers $
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#ifndef OPENMS_ANALYSIS_MAPMATCHING_MAPALIGNMENTEVALUATIONALGORITHM_H
#define OPENMS_ANALYSIS_MAPMATCHING_MAPALIGNMENTEVALUATIONALGORITHM_H

#include <OpenMS/KERNEL/ConsensusMap.h>

namespace OpenMS
{

  class OPENMS_DLLAPI MapAlignmentEvaluationAlgorithm
  {

protected:
    typedef ConsensusFeature::HandleSetType::const_iterator HandleIterator;

public:

    MapAlignmentEvaluationAlgorithm();

    virtual ~MapAlignmentEvaluationAlgorithm();


    virtual void evaluate(const ConsensusMap & conensus_map_in, const ConsensusMap & consensus_map_gt, const double & rt_dev, const double & mz_dev, const Peak2D::IntensityType & int_dev, const bool use_charge, double & out) = 0;

    bool isSameHandle(const FeatureHandle & lhs, const FeatureHandle & rhs, const double & rt_dev, const double & mz_dev, const Peak2D::IntensityType & int_dev, const bool use_charge);

    static void registerChildren();

private:
    MapAlignmentEvaluationAlgorithm(const MapAlignmentEvaluationAlgorithm &);
    MapAlignmentEvaluationAlgorithm & operator=(const MapAlignmentEvaluationAlgorithm &);

  };

} // namespace OpenMS

#endif // OPENMS_ANALYSIS_MAPMATCHING_MAPALIGNMENTEVALUATIONALGORITHM_H