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MascotXMLFile.h
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34 
35 #ifndef OPENMS_FORMAT_MASCOTXMLFILE_H
36 #define OPENMS_FORMAT_MASCOTXMLFILE_H
37 
39 #include <OpenMS/FORMAT/XMLFile.h>
44 
45 
46 namespace OpenMS
47 {
48  class ProteinIdentification;
49 
58  class OPENMS_DLLAPI MascotXMLFile :
59  public Internal::XMLFile
60  {
61 public:
62 
64  MascotXMLFile();
65 
77  void load(const String& filename,
78  ProteinIdentification& protein_identification,
79  std::vector<PeptideIdentification>& id_data,
80  const SpectrumMetaDataLookup& lookup);
81 
94  void load(const String& filename,
95  ProteinIdentification& protein_identification,
96  std::vector<PeptideIdentification>& id_data,
97  std::map<String, std::vector<AASequence> >& peptides,
98  const SpectrumMetaDataLookup& lookup);
99 
107  static void initializeLookup(SpectrumMetaDataLookup& lookup, const PeakMap& experiment, const String& scan_regex = "");
108 
109  };
110 
111 } // namespace OpenMS
112 
113 #endif // OPENMS_FORMAT_MASCOTXMLFILE_H
Representation of a protein identification run.
Definition: ProteinIdentification.h:62
A more convenient string class.
Definition: String.h:57
Helper class for looking up spectrum meta data.
Definition: SpectrumMetaDataLookup.h:142
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:82
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:49
Used to load Mascot XML files.
Definition: MascotXMLFile.h:58

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:01 using doxygen 1.8.13