Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
MassDecomposer.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2017.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $
33 // --------------------------------------------------------------------------
34 //
35 
36 #ifndef OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_MASSDECOMPOSER_H
37 #define OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_MASSDECOMPOSER_H
38 
39 #include <vector>
40 
41 namespace OpenMS
42 {
43 
44  namespace ims
45  {
66  template <typename ValueType,
67  typename DecompositionValueType>
69  {
70 public:
74  typedef ValueType value_type;
75 
79  typedef DecompositionValueType decomposition_value_type;
80 
84  typedef std::vector<decomposition_value_type> decomposition_type;
85 
89  typedef std::vector<decomposition_type> decompositions_type;
90 
94  virtual ~MassDecomposer(){}
95 
102  virtual bool exist(value_type mass) = 0;
103 
110  virtual decomposition_type getDecomposition(value_type mass) = 0;
111 
119  virtual decompositions_type getAllDecompositions(value_type mass) = 0;
120 
127  virtual decomposition_value_type getNumberOfDecompositions(value_type mass) = 0;
128 
129  };
130 
131  } // namespace ims
132 } // namespace OpenMS
133 
134 #endif //OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_MASSDECOMPOSER_H
virtual decomposition_type getDecomposition(value_type mass)=0
ValueType value_type
Definition: MassDecomposer.h:74
virtual decomposition_value_type getNumberOfDecompositions(value_type mass)=0
std::vector< decomposition_value_type > decomposition_type
Definition: MassDecomposer.h:84
virtual decompositions_type getAllDecompositions(value_type mass)=0
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
std::vector< decomposition_type > decompositions_type
Definition: MassDecomposer.h:89
virtual bool exist(value_type mass)=0
An interface to handle decomposing of integer values/masses over a set of integer weights (alphabet)...
Definition: MassDecomposer.h:68
virtual ~MassDecomposer()
Definition: MassDecomposer.h:94
DecompositionValueType decomposition_value_type
Definition: MassDecomposer.h:79

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:01 using doxygen 1.8.13