35 #ifndef OPENMS_FILTERING_DATAREDUCTION_MASSTRACEDETECTION_H 36 #define OPENMS_FILTERING_DATAREDUCTION_MASSTRACEDETECTION_H 87 void updateIterativeWeightedMeanMZ(
const double &,
const double &,
double &,
double &,
double &);
93 void run(
const PeakMap &, std::vector<MassTrace> &);
102 virtual void updateMembers_();
109 void run_(
const MapIdxSortedByInt& chrom_apices,
110 const Size peak_count,
112 const std::vector<Size>& spec_offsets,
113 std::vector<MassTrace> & found_masstraces);
131 #endif // OPENMS_FILTERING_DATAREDUCTION_MASSTRACEDETECTION_H double mass_error_ppm_
Definition: MassTraceDetection.h:116
A more convenient string class.
Definition: String.h:57
MassTrace::MT_QUANTMETHOD quant_method_
Definition: MassTraceDetection.h:119
double min_trace_length_
Definition: MassTraceDetection.h:124
Forward iterator for an area of peaks in an experiment.
Definition: AreaIterator.h:58
MT_QUANTMETHOD
Definition: MassTrace.h:67
double chrom_peak_snr_
Definition: MassTraceDetection.h:118
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Size trace_termination_outliers_
Definition: MassTraceDetection.h:122
double min_sample_rate_
Definition: MassTraceDetection.h:123
double max_trace_length_
Definition: MassTraceDetection.h:125
bool reestimate_mt_sd_
Definition: MassTraceDetection.h:127
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:82
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:128
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:55
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
double noise_threshold_int_
Definition: MassTraceDetection.h:117
String trace_termination_criterion_
Definition: MassTraceDetection.h:121
std::multimap< double, std::pair< Size, Size > > MapIdxSortedByInt
Definition: MassTraceDetection.h:106
A mass trace extraction method that gathers peaks similar in m/z and moving along retention time...
Definition: MassTraceDetection.h:73