MockObjects.h

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// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest $
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#ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
#define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H

#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/OpenSwathAlgoConfig.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/ITransition.h>

#include <boost/shared_ptr.hpp>
#include <map>
#include <vector>

namespace OpenSwath
{

  class OPENSWATHALGO_DLLAPI MockFeature :
    public OpenSwath::IFeature
  {
public:

    MockFeature();

    ~MockFeature();

    void getRT(std::vector<double>& rt);

    void getIntensity(std::vector<double>& intens);

    float getIntensity();

    double getRT();

    std::vector<double> m_rt_vec;
    std::vector<double> m_intensity_vec;
    float m_intensity;
    double m_rt;
  };

  class OPENSWATHALGO_DLLAPI MockMRMFeature :
    public OpenSwath::IMRMFeature
  {
public:

    MockMRMFeature();

    ~MockMRMFeature();

    boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID);

    boost::shared_ptr<OpenSwath::IFeature> getPrecursorFeature(std::string nativeID);

    std::vector<std::string> getNativeIDs() const;

    std::vector<std::string> getPrecursorIDs() const;

    float getIntensity();

    double getRT();

    size_t size();

    std::map<std::string, boost::shared_ptr<MockFeature> > m_features;
    std::map<std::string, boost::shared_ptr<MockFeature> > m_precursor_features;
    float m_intensity;
    double m_rt;
  };

  class OPENSWATHALGO_DLLAPI MockTransitionGroup :
    public OpenSwath::ITransitionGroup
  {
public:

    MockTransitionGroup();

    ~MockTransitionGroup();

    std::size_t size();

    std::vector<std::string> getNativeIDs();

    void getLibraryIntensities(std::vector<double>& intensities);

    std::size_t m_size;
    std::vector<std::string> m_native_ids;
    std::vector<double> m_library_intensities;
  };


  class OPENSWATHALGO_DLLAPI MockSignalToNoise :
    public OpenSwath::ISignalToNoise
  {
public:
    MockSignalToNoise();

    double getValueAtRT(double /* RT */);

    double m_sn_value;
  };

} //end namespace OpenMS

#endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H