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ModifierRep.h
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34 
35 
36 #ifndef OPENMS_CHEMISTRY_MODIFIERREP_H
37 #define OPENMS_CHEMISTRY_MODIFIERREP_H
38 
39 #include <map>
40 #include <vector>
42 
43 namespace OpenMS
44 {
45 
50  class OPENMS_DLLAPI ModifierRep
51  {
52 
53 public:
57  ModifierRep();
61  ModifierRep(const ModifierRep & source);
65  virtual ~ModifierRep();
66 
71  void setNumberOfModifications(Size i);
72 
77  Size getNumberOfModifications() const;
78 
83  const std::vector<std::vector<double> > & getModificationTable();
91  void refreshModificationList(std::map<double, SignedSize> & mod_map, const char & c);
92 
97  Size getMaxModificationMasses();
98 
105  std::vector<String> getModificationsForMass(double & m);
106 
114  std::vector<String> getModificationsForMass(double & m, const String & seq);
115 
116 
117 protected:
118 
119  std::vector<std::vector<double> > modification_table_;
120 
122 
123  std::map<String, std::vector<String> > mass_mapping_;
124 
125  };
126 
127 }
128 
129 #endif //OPENMS_CHEMISTRY_MODIFIERREP_H
A more convenient string class.
Definition: String.h:57
std::vector< std::vector< double > > modification_table_
all possible modifications
Definition: ModifierRep.h:119
Implements modification for suffix arrays.
Definition: ModifierRep.h:50
std::map< String, std::vector< String > > mass_mapping_
maps a mass to the combination of modifications
Definition: ModifierRep.h:123
Size number_of_modifications_
number of maximal modifications
Definition: ModifierRep.h:121
const double c
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:128

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:02 using doxygen 1.8.13