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MultiplexFilteringCentroided.h
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34 
35 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_MULTIPLEXFILTERINGCENTROIDED_H
36 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_MULTIPLEXFILTERINGCENTROIDED_H
37 
47 
48 #include <vector>
49 #include <algorithm>
50 #include <iostream>
51 
52 namespace OpenMS
53 {
66  class OPENMS_DLLAPI MultiplexFilteringCentroided :
67  public MultiplexFiltering
68  {
69 public:
86  MultiplexFilteringCentroided(const PeakMap& exp_picked, const std::vector<MultiplexIsotopicPeakPattern> patterns, int peaks_per_peptide_min, int peaks_per_peptide_max, bool missing_peaks, double intensity_cutoff, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling, String averagine_type="peptide");
87 
94  std::vector<MultiplexFilterResult> filter();
95 
96 private:
113  int nonLocalIntensityFilter_(const MultiplexIsotopicPeakPattern& pattern, int spectrum_index, const std::vector<int>& mz_shifts_actual_indices, std::vector<double>& intensities_actual, int peaks_found_in_all_peptides) const;
114 
115  };
116 
117 }
118 
119 #endif /* MULTIPLEXFILTERINGCENTROIDED_H_ */
A more convenient string class.
Definition: String.h:57
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
filters centroided data for peak patterns
Definition: MultiplexFilteringCentroided.h:66
data structure for pattern of isotopic peaks
Definition: MultiplexIsotopicPeakPattern.h:55
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:82
base class for filtering centroided and profile data for peak patterns
Definition: MultiplexFiltering.h:72

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:02 using doxygen 1.8.13