MzDataFile.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
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#ifndef OPENMS_FORMAT_MZDATAFILE_H
#define OPENMS_FORMAT_MZDATAFILE_H

#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/FORMAT/OPTIONS/PeakFileOptions.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/FORMAT/HANDLERS/MzDataHandler.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/METADATA/DocumentIdentifier.h>

namespace OpenMS
{
  class OPENMS_DLLAPI MzDataFile :
    public Internal::XMLFile,
    public ProgressLogger
  {
  typedef PeakMap MapType;

public:

    MzDataFile();
    ~MzDataFile();

    PeakFileOptions & getOptions();

    const PeakFileOptions & getOptions() const;

    void setOptions(const PeakFileOptions &);

    void load(const String & filename, MapType & map);

    void store(const String & filename, const MapType & map) const;

    bool isSemanticallyValid(const String & filename, StringList & errors, StringList & warnings);

private:

    PeakFileOptions options_;
  };

} // namespace OpenMS

#endif // OPENMS_FORMAT_MZXMLFILE_H