MzIdentMLFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2017.
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// $Maintainer: Mathias Walzer $
// $Authors: Andreas Bertsch, Mathias Walzer $
// --------------------------------------------------------------------------

#ifndef OPENMS_FORMAT_MZIDENTMLFILE_H
#define OPENMS_FORMAT_MZIDENTMLFILE_H

#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>
#include <OpenMS/METADATA/Identification.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/METADATA/PeptideIdentification.h>

#include <vector>

namespace OpenMS
{
  class OPENMS_DLLAPI MzIdentMLFile :
    public Internal::XMLFile,
    public ProgressLogger
  {
public:
    MzIdentMLFile();
    virtual ~MzIdentMLFile();

    void load(const String& filename, Identification& id);

    void load(const String& filename, std::vector<ProteinIdentification>& poid, std::vector<PeptideIdentification>& peid);

    void store(const String& filename, const std::vector<ProteinIdentification>& poid, const std::vector<PeptideIdentification>& peid) const;

    void store(const String& filename, const Identification& id) const;

    bool isSemanticallyValid(const String& filename, StringList& errors, StringList& warnings);

private:

  };

} // namespace OpenMS

#endif // OPENMS_FORMAT_MZIDENTMLFILE_H