Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
PTMXMLHandler.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2017.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: $
33 // --------------------------------------------------------------------------
34 
35 #ifndef OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
36 #define OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
37 
39 
40 #include <vector>
41 #include <map>
42 #include <fstream>
43 
44 namespace OpenMS
45 {
46  namespace Internal
47  {
51  class OPENMS_DLLAPI PTMXMLHandler :
52  public XMLHandler
53  {
54 public:
56  PTMXMLHandler(std::map<String, std::pair<String, String> > & ptm_informations, const String & filename);
57 
59  virtual ~PTMXMLHandler();
60 
62  void writeTo(std::ostream & os);
63 
64  // Docu in base class
65  virtual void endElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname);
66 
67  // Docu in base class
68  virtual void startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const xercesc::Attributes & attributes);
69 
70  // Docu in base class
71  virtual void characters(const XMLCh * const chars, const XMLSize_t /*length*/);
72 
73 protected:
74  std::map<String, std::pair<String, String> > & ptm_informations_;
75  String name_, tag_, composition_;
76  bool open_tag_;
77  };
78 
79  } // namespace Internal
80 
81 } // namespace OpenMS
82 
83 #endif // OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
A more convenient string class.
Definition: String.h:57
Base class for XML handlers.
Definition: XMLHandler.h:110
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
bool open_tag_
Definition: PTMXMLHandler.h:76
std::map< String, std::pair< String, String > > & ptm_informations_
Definition: PTMXMLHandler.h:74
Handler that is used for parsing PTMXML data.
Definition: PTMXMLHandler.h:51
String tag_
Definition: PTMXMLHandler.h:75

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:03 using doxygen 1.8.13