PepIterator.h

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// $Maintainer: Timo Sachsenberg $
// $Authors: Chris Bauer $
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#ifndef OPENMS_CHEMISTRY_PEPITERATOR_H
#define OPENMS_CHEMISTRY_PEPITERATOR_H

#include <OpenMS/DATASTRUCTURES/String.h>

namespace OpenMS
{

  class OPENMS_DLLAPI PepIterator
  {

public:

    typedef std::pair<String, String> FASTAEntry;

    PepIterator();

    virtual ~PepIterator();

    PepIterator(const PepIterator & source);

    virtual FASTAEntry operator*() = 0;

    virtual PepIterator & operator++() = 0;

    virtual PepIterator * operator++(int) = 0;

    virtual void setFastaFile(const String & f) = 0;

    virtual String getFastaFile() = 0;

    virtual void setSpectrum(const std::vector<double> & s) = 0;

    virtual const std::vector<double> & getSpectrum() = 0;

    virtual void setTolerance(double t) = 0;

    virtual double getTolerance() = 0;

    virtual bool begin() = 0;

    virtual bool isAtEnd() = 0;

    static void registerChildren();

  };
}
#endif // OPENMS_CHEMISTRY_PEPITERATOR_H