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ProteinInference.h
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34 
35 #ifndef OPENMS_ANALYSIS_QUANTITATION_PROTEININFERENCE_H
36 #define OPENMS_ANALYSIS_QUANTITATION_PROTEININFERENCE_H
37 
38 #include <OpenMS/KERNEL/Peak2D.h>
39 
40 #include <vector>
41 
42 namespace OpenMS
43 {
44 
45  class PeptideHit;
46  class ConsensusMap;
47 
55  class OPENMS_DLLAPI ProteinInference
56  {
57 
58 public:
59 
61 
64 
67 
69  ProteinInference& operator=(const ProteinInference& rhs);
70 
84  void infer(ConsensusMap& consensus_map, const UInt reference_map);
85 
86 
87 protected:
88 
89  void infer_(ConsensusMap& consensus_map,
90  const size_t protein_idenfication_index,
91  const UInt reference_map);
92 
93  bool sortByUnique_(std::vector<PeptideHit>& peptide_hits_local, const bool is_higher_score_better);
94 
95  }; // !class
96 
97 } // !namespace
98 
99 #endif // OPENMS_ANALYSIS_QUANTITATION_PROTEININFERENCE_H
unsigned int UInt
Unsigned integer type.
Definition: Types.h:95
A container for consensus elements.
Definition: ConsensusMap.h:72
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Peak2D::IntensityType IntensityType
Definition: ProteinInference.h:60
[experimental class] given a peptide quantitation, infer corresponding protein quantities ...
Definition: ProteinInference.h:55

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:03 using doxygen 1.8.13