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RawData.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Lukas Mueller, Markus Mueller $
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35 /*
36  * RawData.h
37  * PeakDetection
38  *
39  * Created by Markus Mueller on 10/19/06.
40  *
41  * Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch
42  * December 2010
43  *
44  */
45 
46 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_RAWDATA_H
47 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_RAWDATA_H
48 
49 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
50 
51 #include <vector>
52 #include <ostream>
53 
54 #include <OpenMS/config.h>
55 
56 namespace OpenMS
57 {
58 
59 // Class for the storage of raw MS data
60  class SUPERHIRN_DLLAPI RawData
61  {
62 
63 public:
64 
65  RawData() {}
66  RawData(std::vector<double> &, std::vector<double> &);
67  virtual ~RawData();
68 
69  friend std::ostream & operator<<(std::ostream &, RawData &);
70 
71  /*
72  * @brief Retrieve raw data as mass and intensity vectors. First argument: Mass values in profile mode
73  * Second argument: Intensity values in profile mode
74  */
75  void get(std::vector<double> &, std::vector<double> &);
76 
77  /*
78  * @brief Set raw data as mass and intensity vectors. First argument: Mass values in profile mode
79  * Second argument: Intensity values in profile mode
80  */
81  void set(std::vector<double> &, std::vector<double> &);
82 
83  // Virtual functions
84  virtual void smooth()
85  {
86  }
87 
88 protected:
89  std::vector<double> profileMasses_;
90  std::vector<double> profileIntensities_;
91  };
92 
93  std::ostream & operator<<(std::ostream & out, RawData & data);
94 
95  inline RawData::RawData(std::vector<double> & masses, std::vector<double> & intensities)
96  {
97  profileMasses_ = masses;
98  profileIntensities_ = intensities;
99  }
100 
101  inline void RawData::get(std::vector<double> & masses, std::vector<double> & intensities)
102  {
103  masses = profileMasses_;
104  intensities = profileIntensities_;
105  }
106 
107  inline void RawData::set(std::vector<double> & masses, std::vector<double> & intensities)
108  {
109  profileMasses_ = masses;
110  profileIntensities_ = intensities;
111  }
112 
113 } // ns
114 
115 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_RAWDATA_H
std::vector< double > profileIntensities_
Definition: RawData.h:90
virtual void smooth()
Definition: RawData.h:84
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
void set(std::vector< double > &, std::vector< double > &)
Definition: RawData.h:107
std::vector< double > profileMasses_
Definition: RawData.h:89
std::ostream & operator<<(std::ostream &os, const AccurateMassSearchResult &amsr)
RawData()
Definition: RawData.h:65
void get(std::vector< double > &, std::vector< double > &)
Definition: RawData.h:101
Definition: RawData.h:60

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:03 using doxygen 1.8.13