36 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNPARAMETERS_H 37 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNPARAMETERS_H 39 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h> 449 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNPARAMETERS_H double getInitialTrTolerance()
Definition: SuperHirnParameters.h:422
double getLowIntensityMSSignalThreshold()
Definition: SuperHirnParameters.h:442
int getBackgroundIntensityBinsMinBinCount()
Definition: SuperHirnParameters.h:250
double getMassTolPpm()
Definition: SuperHirnParameters.h:357
std::map< int, float > * getScanTRIndex()
Definition: SuperHirnParameters.h:305
bool centroidDataModus_
Definition: SuperHirnParameters.h:171
double maxFeatureMZ_
Definition: SuperHirnParameters.h:155
int getMinNbClusterMembers()
Definition: SuperHirnParameters.h:300
double getToleranceMZ()
Definition: SuperHirnParameters.h:290
double getMinTR()
Definition: SuperHirnParameters.h:255
double getPercentageIntensityElutionBorderVariation()
Definition: SuperHirnParameters.h:432
double ms1PeakAreaTrResolution_
Definition: SuperHirnParameters.h:202
double getMinFeatureMZ()
Definition: SuperHirnParameters.h:265
void setInitIsotopeDist()
Definition: SuperHirnParameters.h:412
SuperHirn parameters singleton class containing all static configuration variables.
Definition: SuperHirnParameters.h:48
double backgroundIntensityBinsIntens_
Definition: SuperHirnParameters.h:149
double getMs1PeakAreaTrResolution()
Definition: SuperHirnParameters.h:417
float intensityThreshold_
Definition: SuperHirnParameters.h:159
bool createFeatureElutionProfiles()
Definition: SuperHirnParameters.h:397
static SuperHirnParameters * instance_
Definition: SuperHirnParameters.h:144
double getTrTol()
Definition: SuperHirnParameters.h:382
bool initIsotopeDist_
Definition: SuperHirnParameters.h:209
double getMs1FeatureMergingTrTolerance()
Definition: SuperHirnParameters.h:427
double detectableIsotopeFactor_
Definition: SuperHirnParameters.h:185
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
double massTolPpm_
Definition: SuperHirnParameters.h:188
static bool haveInstance_
Definition: SuperHirnParameters.h:145
double percentageIntensityElutionBorderVariation_
Definition: SuperHirnParameters.h:205
double ms1TRResolution_
Definition: SuperHirnParameters.h:170
bool storeAllLowProbabilityMS2Scans()
Definition: SuperHirnParameters.h:392
double minTR_
Definition: SuperHirnParameters.h:152
double backgroundIntensityBinsMZ_
Definition: SuperHirnParameters.h:148
double getMassTolDa()
Definition: SuperHirnParameters.h:362
int minFeatureChrg_
Definition: SuperHirnParameters.h:156
double getMaxTR()
Definition: SuperHirnParameters.h:260
double getDetectableIsotopeFactor()
Definition: SuperHirnParameters.h:347
bool createFeatureElutionProfiles_
Definition: SuperHirnParameters.h:199
double mzTolPpm_
Definition: SuperHirnParameters.h:194
double initialTrTolerance_
Definition: SuperHirnParameters.h:203
double getIntensityCV()
Definition: SuperHirnParameters.h:352
double ppmToleranceForMZClustering_
Definition: SuperHirnParameters.h:206
SuperHirnParameters & operator=(const SuperHirnParameters &)
Definition: SuperHirnParameters.h:219
double intensityFloor_
Definition: SuperHirnParameters.h:191
double lowIntensityMSSignalThreshold_
Definition: SuperHirnParameters.h:208
double maxInterScanRetentionTimeDistance_
Definition: SuperHirnParameters.h:161
double getMinIntensity()
Definition: SuperHirnParameters.h:367
double getMaxInterScanRetentionTimeDistance()
Definition: SuperHirnParameters.h:295
int minNbClusterMembers_
Definition: SuperHirnParameters.h:162
double getIntensityFloor()
Definition: SuperHirnParameters.h:372
int backgroundIntensityBinsMinBinCount_
Definition: SuperHirnParameters.h:150
double trTol_
Definition: SuperHirnParameters.h:195
int maxFeatureChrg_
Definition: SuperHirnParameters.h:157
double getMaxFeatureMZ()
Definition: SuperHirnParameters.h:270
float getIntensityThreshold()
Definition: SuperHirnParameters.h:285
int getMinFeatureChrg()
Definition: SuperHirnParameters.h:275
bool storeAllLowProbabilityMS2Scans_
Definition: SuperHirnParameters.h:197
double maxTR_
Definition: SuperHirnParameters.h:153
double getBackgroundIntensityBinsTR()
Definition: SuperHirnParameters.h:235
int centroidWindowWidth_
Definition: SuperHirnParameters.h:172
double minFeatureMZ_
Definition: SuperHirnParameters.h:154
double getBackgroundIntensityBinsMZ()
Definition: SuperHirnParameters.h:240
bool ms1FeatureClustering_
Definition: SuperHirnParameters.h:200
int getMaxFeatureChrg()
Definition: SuperHirnParameters.h:280
double getMS1TRResolution()
Definition: SuperHirnParameters.h:332
double backgroundIntensityBinsTR_
Definition: SuperHirnParameters.h:147
A facade for various Superhirn FeatureFinder classes. Use FeatureFinderAlgorithmSH instead...
Definition: FeatureFinderAlgorithmSHCtrl.h:56
static SuperHirnParameters * instance()
Definition: SuperHirnParameters.h:224
bool centroidDataModus()
Definition: SuperHirnParameters.h:337
bool ms1FeatureClustering()
Definition: SuperHirnParameters.h:402
double peptideProbabilityThreshold_
Definition: SuperHirnParameters.h:196
double getBackgroundIntensityBinsIntens()
Definition: SuperHirnParameters.h:245
double toleranceMZ_
Definition: SuperHirnParameters.h:160
int getCentroidWindowWidth()
Definition: SuperHirnParameters.h:342
double getMzTolPpm()
Definition: SuperHirnParameters.h:377
double getPeptideProbabilityThreshold()
Definition: SuperHirnParameters.h:387
double minIntensity_
Definition: SuperHirnParameters.h:190
double ms1FeatureMergingTrTolerance_
Definition: SuperHirnParameters.h:204
bool isInitIsotopeDist()
Definition: SuperHirnParameters.h:407
std::map< int, float > scanTRIndex_
Definition: SuperHirnParameters.h:164
double massTolDa_
Definition: SuperHirnParameters.h:189
double intensityCV_
Definition: SuperHirnParameters.h:186
double getPpmToleranceForMZClustering()
Definition: SuperHirnParameters.h:437