SvmTheoreticalSpectrumGeneratorSet.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg $
// $Authors: Sandro Andreotti $
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#ifndef OPENMS_CHEMISTRY_SVMTHEORETICALSPECTRUMGENERATORSET_H
#define OPENMS_CHEMISTRY_SVMTHEORETICALSPECTRUMGENERATORSET_H

#include <OpenMS/KERNEL/StandardDeclarations.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/MSExperiment.h>

#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h>

namespace OpenMS
{
  class OPENMS_DLLAPI SvmTheoreticalSpectrumGeneratorSet
  {
public:

    SvmTheoreticalSpectrumGeneratorSet();

    SvmTheoreticalSpectrumGeneratorSet(const SvmTheoreticalSpectrumGeneratorSet & source);

    virtual ~SvmTheoreticalSpectrumGeneratorSet();

    SvmTheoreticalSpectrumGeneratorSet & operator=(const SvmTheoreticalSpectrumGeneratorSet & tsg);

    void simulate(PeakSpectrum & spectrum, const AASequence & peptide, boost::random::mt19937_64& rng, Size precursor_charge);

    void load(String);

    void getSupportedCharges(std::set<Size> & charges);

    SvmTheoreticalSpectrumGenerator & getSvmModel(Size);

protected:
    //map containing the simulator for each charge variant
    std::map<Size, SvmTheoreticalSpectrumGenerator> simulators_;

  };


}



#endif