TMTElevenPlexQuantitationMethod.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2017.
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// $Maintainer: Timo Sachsenberg $
// $Authors: Stephan Aiche $
// --------------------------------------------------------------------------

#ifndef OPENMS_ANALYSIS_QUANTITATION_TMTELEVENPLEXQUANTITATIONMETHOD_H
#define OPENMS_ANALYSIS_QUANTITATION_TMTELEVENPLEXQUANTITATIONMETHOD_H

#include <OpenMS/config.h>

#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>

namespace OpenMS
{
  class OPENMS_DLLAPI TMTElevenPlexQuantitationMethod :
    public IsobaricQuantitationMethod
  {
public:
    TMTElevenPlexQuantitationMethod();

    ~TMTElevenPlexQuantitationMethod();

    TMTElevenPlexQuantitationMethod(const TMTElevenPlexQuantitationMethod& other);

    TMTElevenPlexQuantitationMethod & operator=(const TMTElevenPlexQuantitationMethod& rhs);


    const String& getName() const;

    const IsobaricChannelList& getChannelInformation() const;

    Size getNumberOfChannels() const;

    virtual Matrix<double> getIsotopeCorrectionMatrix() const;

    Size getReferenceChannel() const;


  private:
    IsobaricChannelList channels_;

    static const String name_;

    Size reference_channel_;

    static const std::vector<String> channel_names_;

  protected:
    void setDefaultParams_();

    void updateMembers_();

  };
} // namespace

#endif // OPENMS_ANALYSIS_QUANTITATION_TMTELEVENPLEXQUANTITATIONMETHOD_H