TOPPASBase.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2017.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker, Chris Bielow $
// --------------------------------------------------------------------------

#ifndef OPENMS_VISUAL_APPLICATIONS_TOPPASBASE_H
#define OPENMS_VISUAL_APPLICATIONS_TOPPASBASE_H

// OpenMS_GUI config
#include <OpenMS/VISUAL/OpenMS_GUIConfig.h>

//OpenMS
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/VISUAL/TOPPASTreeView.h>

//QT
#include <QtGui/QMainWindow>
#include <QtGui/QWorkspace>
#include <QtGui/QButtonGroup>
#include <QtCore/QProcess>
#include <QtGui/QSplashScreen>
#include <QNetworkReply>

class QToolBar;
class QListWidget;
class QTextEdit;
class QWorkspace;
class QLabel;
class QWidget;
class QTreeWidget;
class QTreeWidgetItem;
class QWebView;
class QNetworkAccessManager;


namespace OpenMS
{
  class TOPPASWidget;
  class TOPPASScene;
  class TOPPASTabBar;
  class TOPPASLogWindow;
  class TOPPASResources;

  class OPENMS_GUI_DLLAPI TOPPASBase :
    public QMainWindow,
    public DefaultParamHandler
  {
    Q_OBJECT

public:

    TOPPASBase(QWidget* parent = 0);
    virtual ~TOPPASBase();

    void loadPreferences(String filename = "");
    void savePreferences();
    void loadFiles(const StringList& list, QSplashScreen* splash_screen);

public slots:
    void addTOPPASFile(const String& file_name, bool in_new_window = true);
    void openFileDialog();
    void openExampleDialog();
    void newPipeline(const int id = -1);
    void includePipeline();
    void saveCurrentPipelineAs();
    void savePipeline();
    void exportAsImage();
    void loadPipelineResourceFile();
    void savePipelineResourceFile();
    void openOnlinePipelineRepository();
    void preferencesDialog();
    void updateCurrentPath();
    void updateTabBar(QWidget* w);
    void showAboutDialog();
    void showURL();
    void showStatusMessage(std::string msg, OpenMS::UInt time);
    void showCursorStatus(double x, double y);
    void closeFile();
    void updateToolBar();
    void runPipeline();
    void abortPipeline();
    void toolStarted();
    void toolFinished();
    void toolCrashed();
    void toolFailed();
    void outputVertexFinished(const String& file);
    void updateTOPPOutputLog(const QString& out);
    void showPipelineFinishedLogMessage();
    void saveToClipboard(TOPPASScene* scene);
    void sendClipboardContent();
    void refreshParameters();
    void openFilesInTOPPView(QStringList all_files);
    void openToppasFile(QString filename);
protected slots:

    void closeByTab(int id);
    void focusByTab(int id);

    void updateMenu();
    void showAsWindow_(TOPPASWidget* sw, const String& caption, const int special_id = -1);
    void insertNewVertex_(double x, double y, QTreeWidgetItem* item = 0);
    void insertNewVertexInCenter_(QTreeWidgetItem* item);

    void downloadTOPPASfromHomepage_(const QUrl& url);
    void toppasFileDownloaded_(QNetworkReply* r);
    void TOPPASreadyRead();

    void descriptionUpdated_();

protected:

    TOPPASLogWindow* log_;
    QTextEdit* desc_;

    QToolBar* tool_bar_;

    QWorkspace* ws_;

    QWebView* webview_;
    QNetworkAccessManager* network_manager_;
    QNetworkReply* network_reply_;

    TOPPASTabBar* tab_bar_;

    QTreeWidget* tools_tree_view_;
    QListWidget* blocks_list_;

    QLabel* message_label_;

    TOPPASWidget* window_(int id) const;


    String current_path_;

    String tmp_path_;

    static int node_offset_;

    static qreal z_value_;

    TOPPASWidget* activeWindow_() const;


    void closeEvent(QCloseEvent* event);
    void keyPressEvent(QKeyEvent* e);

    enum LogState
    {
      LS_NOTICE, 
      LS_WARNING, 
      LS_ERROR 
    };
    void showLogMessage_(LogState state, const String& heading, const String& body);

    TOPPASScene* clipboard_scene_;


public:
    static int const IDINITIALUNTITLED = 1000;


    static TOPPASTreeView* createTOPPToolsTreeWidget(QWidget* parent_widget = 0);

    static QString savePipelineAs(TOPPASWidget* w, QString current_path);

    static QString loadPipelineResourceFile(TOPPASWidget* w, QString current_path);

    static QString savePipelineResourceFile(TOPPASWidget* w, QString current_path);

    static QString refreshPipelineParameters(TOPPASWidget* tw, QString current_path);
  }; //class

} //namespace

#endif // OPENMS_APPLICATIONS_TOPPASBASE_H