TOPPViewIdentificationViewBehavior.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Timo Sachsenberg$
// $Authors: Timo Sachsenberg $
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#ifndef OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
#define OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H

#include <OpenMS/METADATA/SpectrumSettings.h>
#include <OpenMS/VISUAL/LayerData.h>
#include <vector>

namespace OpenMS
{
  class TOPPViewBase;

  class TOPPViewIdentificationViewBehavior
    : public QObject
  {
    Q_OBJECT

    //Feature map type
    typedef LayerData::FeatureMapType FeatureMapType;
    //Feature map managed type
    typedef LayerData::FeatureMapSharedPtrType FeatureMapSharedPtrType;

    //Consensus feature map type
    typedef LayerData::ConsensusMapType ConsensusMapType;
    //Consensus  map managed type
    typedef LayerData::ConsensusMapSharedPtrType ConsensusMapSharedPtrType;

    //Peak map type
    typedef LayerData::ExperimentType ExperimentType;
    //Main managed data type (experiment)
    typedef LayerData::ExperimentSharedPtrType ExperimentSharedPtrType;
    typedef ExperimentType::SpectrumType SpectrumType;

public:
    TOPPViewIdentificationViewBehavior(TOPPViewBase * parent);

public slots:
    virtual void showSpectrumAs1D(int spectrum_index, int peptide_id_index, int peptide_hit_index);

    virtual void showSpectrumAs1D(int index);

    virtual void activate1DSpectrum(int spectrum_index, int peptide_id_index, int peptide_hit_index);

    virtual void activate1DSpectrum(int index);

    virtual void deactivate1DSpectrum(int index);

    virtual void activateBehavior();

    virtual void deactivateBehavior();

    void setVisibleArea1D(double l, double h);

private:
    void addPrecursorLabels1D_(const std::vector<Precursor> & pcs);

    void removeTemporaryAnnotations_(Size spectrum_index);

    void addTheoreticalSpectrumLayer_(const PeptideHit & ph);

    void removeTheoreticalSpectrumLayer_();

    void addPeakAnnotations_(const std::vector<PeptideIdentification> & ph);

    void addFragmentAnnotations_(const PeptideHit & ph);

  String n_times(Size n, String input);

  void extractCoverageStrings(std::vector<PeptideHit::PeakAnnotation> frag_annotations, String& alpha_string, String& beta_string, Size alpha_size, Size beta_size);

  String collapseStringVector(std::vector<String> strings);

private:
    TOPPViewBase * tv_;
    std::vector<Annotation1DItem *> temporary_annotations_;
  };
}

#endif // OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H