Resolves ambiguous annotations of features with peptide identifications.
potential predecessor tools | IDConflictResolver | potential successor tools |
IDMapper | TextExporter | |
FeatureLinkerUnlabeled (or another feature grouping algorithm) | ProteinQuantifier |
The peptide identifications are filtered so that only one identification with a single hit (with the best score) is associated to each feature. (If two IDs have the same best score, either one of them may be selected.)
This step may be useful before applying ProteinQuantifier, because features with ambiguous annotation are not considered for the quantification.
The command line parameters of this tool are:
IDConflictResolver -- Resolves ambiguous annotations of features with peptide identifications Version: 2.3.0 Jan 9 2018, 17:46:23, Revision: 38ae115 Usage: IDConflictResolver <options> Options (mandatory options marked with '*'): -in <file>* Input file (data annotated with identifications) (valid formats: 'featureXML', 'consensu sXML') -out <file>* Output file (data with one peptide identification per feature) (valid formats: 'featureX ML', 'consensusXML') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.3.0 | Documentation generated on Tue Jan 9 2018 18:22:06 using doxygen 1.8.13 |