Resampler can be used to transform an LC/MS map into a resampled map.
pot. predecessor tools | Resampler | pot. successor tools |
- | NoiseFilterSGolay |
When writing an peak file, all spectra are resampled with a new sampling rate. The number of spectra does not change.
The command line parameters of this tool are:
Resampler -- Transforms an LC/MS map into a resampled map or a PNG image. Version: 2.3.0 Jan 9 2018, 17:46:23, Revision: 38ae115 Usage: Resampler <options> Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Output file in mzML format (valid formats: 'mzML') -sampling_rate <rate> New sampling rate in m/z dimension (in Th unless ppm flag is set) (default : '0.1' min: '0') -ppm Sampling_rate is given in ppm -align_sampling Ensures that sampling is performed equally across the map (same raster is used for all spectra) -min_int_cutoff <min intensity> Intensity cutoff for peaks to be stored in output spectrum (only peaks above this cutoff will be stored, -1 means store all data) (default: '-1') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.3.0 | Documentation generated on Tue Jan 9 2018 18:22:06 using doxygen 1.8.13 |