Filters the top Peaks in the given spectra according to a given schema/thresholdset
| pot. predecessor tools |  SpectraFilter | pot. successor tools |
| PeakPickerWavelet | any tool operating on MS peak data (in mzML format) |
The command line parameters of this tool are:
SpectraFilterSqrtMower -- Applies thresholdfilter to peak spectra.
Version: 2.3.0 Jan 9 2018, 17:46:23, Revision: 38ae115
Usage:
SpectraFilterSqrtMower <options>
This tool has algorithm parameters that are not shown here! Please check the ini file for a detailed descript
ion or use the --helphelp option.
Options (mandatory options marked with '*'):
-in <file>* Input file (valid formats: 'mzML')
-out <file>* Output file (valid formats: 'mzML')
Common TOPP options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
The following configuration subsections are valid:
- algorithm Algorithm parameter subsection.
You can write an example INI file using the '-write_ini' option.
Documentation of subsection parameters can be found in the doxygen documentation or the INIFileEditor.
Have a look at the OpenMS documentation for more information.
INI file documentation of this tool:
Legend:
required parameter
advanced parameter
+SpectraFilterSqrtMowerApplies thresholdfilter to peak spectra.
version2.3.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'SpectraFilterSqrtMower'
in
input file *.mzML
out
output file *.mzML
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
forcefalse
Overwrite tool specific checks.true,false
testfalse
Enables the test mode (needed for internal use only)true,false