TransitionHelper.h

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#ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONHELPER_H
#define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONHELPER_H

#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/OpenSwathAlgoConfig.h>
#include <map>
#include <vector>
#include <string>

namespace OpenSwath
{

  struct LightCompound;
  struct LightTargetedExperiment;
  struct LightTransition;

  struct OPENSWATHALGO_DLLAPI TransitionHelper
  {

    static void convert(LightTargetedExperiment& lte,
                        std::map<std::string,
                        std::vector<LightTransition> >& transmap);


    // TODO : remove and explain German comments
    // spiegel
    static bool findPeptide(const LightTargetedExperiment& lte,
                            const std::string& peptideRef,
                            LightCompound& pep);
  };

} //end namespace

#endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONHELPER_H