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TransitionPQPReader.h
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34 
35 #ifndef OPENMS_ANALYSIS_OPENSWATH_TRANSITIONPQPREADER_H
36 #define OPENMS_ANALYSIS_OPENSWATH_TRANSITIONPQPREADER_H
37 
39 
40 #include <boost/range/algorithm.hpp>
41 #include <boost/range/algorithm_ext/erase.hpp>
42 #include <sqlite3.h>
43 #include <iostream>
44 
45 namespace OpenMS
46 {
47 
56  class OPENMS_DLLAPI TransitionPQPReader :
57  public TransitionTSVReader
58  {
59 
60 private:
68  void readPQPInput_(const char* filename, std::vector<TSVTransition>& transition_list, bool legacy_traml_id = false);
69 
75  void writePQPOutput_(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
76 
77 public:
78 
82 
86 
93  void convertTargetedExperimentToPQP(const char* filename, OpenMS::TargetedExperiment& targeted_exp);
94 
102  void convertPQPToTargetedExperiment(const char* filename, OpenMS::TargetedExperiment& targeted_exp, bool legacy_traml_id = false);
103 
111  void convertPQPToTargetedExperiment(const char* filename, OpenSwath::LightTargetedExperiment& targeted_exp, bool legacy_traml_id = false);
112 
113  };
114 }
115 
116 #endif // OPENMS_ANALYSIS_OPENSWATH_TRANSITIONPQPREADER_H
117 
This class can convert TraML and TSV files into each other.
Definition: TransitionTSVReader.h:81
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
This class can convert TraML and PQP files into each other.
Definition: TransitionPQPReader.h:56
A description of a targeted experiment containing precursor and production ions.
Definition: TargetedExperiment.h:62
Definition: TransitionExperiment.h:195

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:04 using doxygen 1.8.13