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Transitions.h
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34 
35 #ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONS_H
36 #define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONS_H
37 
38 #include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/OpenSwathAlgoConfig.h>
39 #include <string>
40 #include <vector>
42 
43 namespace OpenSwath
44 {
45 
46  struct OPENSWATHALGO_DLLAPI Peptide
47  {
48  double rt;
49  int charge;
50  std::string sequence;
51  std::string id;
52  int getChargeState() const
53  {
54  return charge;
55  }
56 
57  std::vector<LightModification> modifications;
58  std::vector<LightTransition> transitions;
59  };
60 
61  struct OPENSWATHALGO_DLLAPI Protein
62  {
63  std::string id;
64  std::string sequence;
65  std::vector<Peptide> peptides;
66  };
67 
68  struct OPENSWATHALGO_DLLAPI TargetedExperiment
69  {
70  std::vector<Protein> proteins;
71  };
72 
73 }
74 
75 #endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_TRANSITIONS_H
std::vector< LightModification > modifications
Definition: Transitions.h:57
std::vector< Peptide > peptides
Definition: Transitions.h:65
Definition: Transitions.h:46
double rt
Definition: Transitions.h:48
std::vector< LightTransition > transitions
Definition: Transitions.h:58
std::vector< Protein > proteins
Definition: Transitions.h:70
std::string sequence
Definition: Transitions.h:64
Definition: Transitions.h:61
int getChargeState() const
Definition: Transitions.h:52
Definition: MRMScoring.h:51
std::string id
Definition: Transitions.h:63
std::string id
Definition: Transitions.h:51
std::string sequence
Definition: Transitions.h:50
int charge
Definition: Transitions.h:49
Definition: Transitions.h:68

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:04 using doxygen 1.8.13