Evaluation tool for feature detection algorithms.
To plot the ROC curve you might use:
The command line parameters of this tool are:
FFEval -- Evaluation tool for feature detection algorithms. Version: 2.3.0 Jan 9 2018, 17:46:23, Revision: 38ae115 Usage: FFEval <options> Options (mandatory options marked with '*'): -in <file>* Feature input file, which contains the data to be tested against the truth file. (valid formats: 'featureXML') -truth <file>* Truth feature file that defines what features should be found. (valid formats: 'feat ureXML') -rt_tol <double> Allowed tolerance of RT relative to average feature RT span. (default: '0.3' min: '0') -rt_tol_abs <double> Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero). (default: '-1' min: '-1') -mz_tol <double> Allowed tolerance in m/z (is divided by charge). (default: '0.25' min: '0') -out <file> Feature output file. If given, an annotated input file is written. (valid formats: 'featureXML') -abort_reasons <file> Feature file containing seeds with abort reasons. (valid formats: 'featureXML') -out_roc <file> If given, a ROC curve file is created (ROC points based on intensity threshold) (val id formats: 'csv') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.3.0 | Documentation generated on Tue Jan 9 2018 18:22:06 using doxygen 1.8.13 |