Computes a 'q-value vs. #PSM' plot to visualize the number identifications for a certain q-value.
An arbitrary number of idXML files resulting from a target+decoy search can be provided as input.
Since the q-value can be computed independently from a scoring scheme, no further preprocessing (like IDPep or FDR) is required, apart from a target-decoy annotation! I.e., apply PeptideIndexer to the immediate output of a search engine (or ConsensusID) and use this as input to this tool.
The command line parameters of this tool are:
INI file documentation of this tool:
| OpenMS / TOPP release 2.3.0 | Documentation generated on Tue Jan 9 2018 18:22:05 using doxygen 1.8.13 |