35 #ifndef OPENMS_FORMAT_XTANDEMXMLFILE_H 36 #define OPENMS_FORMAT_XTANDEMXMLFILE_H 46 class ProteinIdentification;
86 void startElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname,
const xercesc::Attributes& attributes);
89 void endElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname);
92 void characters(
const XMLCh*
const chars,
const XMLSize_t );
150 #endif // OPENMS_FORMAT_XTANDEMXMLFILE_H Representation of a protein identification run.
Definition: ProteinIdentification.h:62
A more convenient string class.
Definition: String.h:57
Int current_charge_
Definition: XTandemXMLFile.h:121
std::set< UInt > protein_uids_
Definition: XTandemXMLFile.h:115
String tag_
Definition: XTandemXMLFile.h:127
unsigned int UInt
Unsigned integer type.
Definition: Types.h:95
std::map< UInt, std::vector< PeptideHit > > peptide_hits_
Definition: XTandemXMLFile.h:109
Base class for XML handlers.
Definition: XMLHandler.h:110
String current_protein_
Definition: XTandemXMLFile.h:118
ModificationDefinitionsSet default_nterm_mods_
Definition: XTandemXMLFile.h:145
ModificationDefinitionsSet mod_def_set_
Definition: XTandemXMLFile.h:142
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
std::vector< ProteinHit > protein_hits_
Definition: XTandemXMLFile.h:112
Used to load XTandemXML files.
Definition: XTandemXMLFile.h:56
bool is_protein_note_
Definition: XTandemXMLFile.h:103
std::map< UInt, String > spectrum_ids_
Definition: XTandemXMLFile.h:139
bool is_spectrum_note_
Definition: XTandemXMLFile.h:106
Representation of a set of modification definitions.
Definition: ModificationDefinitionsSet.h:59
String previous_seq_
Definition: XTandemXMLFile.h:136
ProteinIdentification * protein_identification_
Definition: XTandemXMLFile.h:100
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:49
UInt current_stop_
Definition: XTandemXMLFile.h:133
int Int
Signed integer type.
Definition: Types.h:103
UInt current_id_
Definition: XTandemXMLFile.h:124
UInt current_start_
Definition: XTandemXMLFile.h:130