AASequence() | AASequence | |
AASequence(const AASequence &rhs) | AASequence | |
begin() | AASequence | inline |
begin() const | AASequence | inline |
c_term_mod_ | AASequence | protected |
empty() const | AASequence | |
end() | AASequence | inline |
end() const | AASequence | inline |
fromString(const String &s, bool permissive=true) | AASequence | static |
fromString(const char *s, bool permissive=true) | AASequence | static |
getAAFrequencies(Map< String, Size > &frequency_table) const | AASequence | |
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const | AASequence | |
getCTerminalModification() const | AASequence | |
getCTerminalModificationName() const | AASequence | |
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) const | AASequence | |
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const | AASequence | |
getNTerminalModification() const | AASequence | |
getNTerminalModificationName() const | AASequence | |
getPrefix(Size index) const | AASequence | |
getResidue(Size index) const | AASequence | |
getSubsequence(Size index, UInt number) const | AASequence | |
getSuffix(Size index) const | AASequence | |
has(const Residue &residue) const | AASequence | |
hasCTerminalModification() const | AASequence | |
hasNTerminalModification() const | AASequence | |
hasPrefix(const AASequence &peptide) const | AASequence | |
hasSubsequence(const AASequence &peptide) const | AASequence | |
hasSuffix(const AASequence &peptide) const | AASequence | |
isModified() const | AASequence | |
n_term_mod_ | AASequence | protected |
operator!=(const AASequence &rhs) const | AASequence | |
operator+(const AASequence &peptide) const | AASequence | |
operator+(const Residue *residue) const | AASequence | |
operator+=(const AASequence &) | AASequence | |
operator+=(const Residue *) | AASequence | |
operator<(const AASequence &rhs) const | AASequence | |
operator<<(std::ostream &os, const AASequence &peptide) | AASequence | friend |
operator=(const AASequence &rhs) | AASequence | |
operator==(const AASequence &rhs) const | AASequence | |
operator>>(std::istream &is, const AASequence &peptide) | AASequence | friend |
operator[](Size index) const | AASequence | |
parseModRoundBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, bool dot_notation, bool dot_terminal) | AASequence | protectedstatic |
parseModSquareBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity) | AASequence | protectedstatic |
parseString_(const String &peptide, AASequence &aas, bool permissive=true) | AASequence | protectedstatic |
peptide_ | AASequence | protected |
setCTerminalModification(const String &modification) | AASequence | |
setModification(Size index, const String &modification) | AASequence | |
setNTerminalModification(const String &modification) | AASequence | |
size() const | AASequence | |
toBracketString(bool integer_mass=true, const std::vector< String > &fixed_modifications=std::vector< String >()) const | AASequence | |
toString() const | AASequence | |
toUnmodifiedString() const | AASequence | |
~AASequence() | AASequence | virtual |