| CMD enum value | ProgressLogger | |
| current_logger_ | ProgressLogger | mutableprotected |
| endProgress() const | ProgressLogger | |
| extract_id_(TransitionExpT &transition_exp_used, String id) | ChromatogramExtractor | privatestatic |
| extract_value_bartlett(const SpectrumT &input, const double &mz, Size &peak_idx, double &integrated_intensity, const double &extract_window, const bool ppm) | ChromatogramExtractor | inline |
| extract_value_tophat(const SpectrumT &input, const double &mz, Size &peak_idx, double &integrated_intensity, const double &extract_window, const bool ppm) | ChromatogramExtractor | inline |
| extractChromatograms(const ExperimentT &input, ExperimentT &output, OpenMS::TargetedExperiment &transition_exp, double mz_extraction_window, bool ppm, TransformationDescription trafo, double rt_extraction_window, String filter) | ChromatogramExtractor | inline |
| extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, std::vector< ExtractionCoordinates > extraction_coordinates, double mz_extraction_window, bool ppm, String filter) | ChromatogramExtractor | inline |
| ExtractionCoordinates typedef | ChromatogramExtractor | |
| getFilterNr_(String filter) | ChromatogramExtractor | private |
| getLogType() const | ProgressLogger | |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| NONE enum value | ProgressLogger | |
| operator=(const ProgressLogger &other) | ProgressLogger | |
| outsideExtractionWindow_(const ReactionMonitoringTransition &transition, double current_rt, const TransformationDescription &trafo, double rt_extraction_window) | ChromatogramExtractor | private |
| PeptideRTMap_ | ChromatogramExtractor | private |
| populatePeptideRTMap_(OpenMS::TargetedExperiment &transition_exp, double rt_extraction_window) | ChromatogramExtractor | private |
| prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenMS::TargetedExperiment &transition_exp, const double rt_extraction_window, const bool ms1) const | ChromatogramExtractor | |
| prepareSpectra_(SpectrumSettingsT &settings, std::vector< ChromatogramT > &chromatograms, OpenMS::TargetedExperiment &transition_exp) | ChromatogramExtractor | inlineprivate |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| return_chromatogram(std::vector< OpenSwath::ChromatogramPtr > &chromatograms, std::vector< ChromatogramExtractor::ExtractionCoordinates > &coordinates, TransitionExpT &transition_exp_used, SpectrumSettings settings, std::vector< OpenMS::MSChromatogram > &output_chromatograms, bool ms1) | ChromatogramExtractor | inlinestatic |
| setLogType(LogType type) const | ProgressLogger | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| type_ | ProgressLogger | mutableprotected |
| ~ProgressLogger() | ProgressLogger | |