addRatio(const Ratio &r) | ConsensusFeature | |
AnnotationState enum name | BaseFeature | |
BaseFeature() | BaseFeature | |
BaseFeature(const BaseFeature &feature) | BaseFeature | |
BaseFeature(const Peak2D &point) | BaseFeature | explicit |
BaseFeature(const RichPeak2D &point) | BaseFeature | explicit |
begin() const | ConsensusFeature | |
begin() | ConsensusFeature | |
charge_ | BaseFeature | protected |
ChargeType typedef | BaseFeature | |
clear() | ConsensusFeature | |
clearMetaInfo() | MetaInfoInterface | |
clearUniqueId() | UniqueIdInterface | inline |
computeConsensus() | ConsensusFeature | |
computeDechargeConsensus(const FeatureMap &fm, bool intensity_weighted_averaging=false) | ConsensusFeature | |
computeMonoisotopicConsensus() | ConsensusFeature | |
ConsensusFeature() | ConsensusFeature | |
ConsensusFeature(const ConsensusFeature &rhs) | ConsensusFeature | |
ConsensusFeature(const BaseFeature &feature) | ConsensusFeature | explicit |
ConsensusFeature(UInt64 map_index, const Peak2D &element, UInt64 element_index) | ConsensusFeature | |
ConsensusFeature(UInt64 map_index, const BaseFeature &element) | ConsensusFeature | |
const_iterator typedef | ConsensusFeature | |
const_reverse_iterator typedef | ConsensusFeature | |
CoordinateType typedef | Peak2D | |
createIfNotExists_() | MetaInfoInterface | inlineprotected |
DIMENSION enum value | Peak2D | |
dimension_name_full_ | Peak2D | protectedstatic |
dimension_name_short_ | Peak2D | protectedstatic |
dimension_unit_full_ | Peak2D | protectedstatic |
dimension_unit_short_ | Peak2D | protectedstatic |
DimensionDescription enum name | Peak2D | |
empty() const | ConsensusFeature | |
end() const | ConsensusFeature | |
end() | ConsensusFeature | |
ensureUniqueId() | UniqueIdInterface | inline |
FEATURE_ID_MULTIPLE_DIVERGENT enum value | BaseFeature | |
FEATURE_ID_MULTIPLE_SAME enum value | BaseFeature | |
FEATURE_ID_NONE enum value | BaseFeature | |
FEATURE_ID_SINGLE enum value | BaseFeature | |
fullDimensionName(UInt const dim) | Peak2D | static |
fullDimensionNameMZ() | Peak2D | static |
fullDimensionNameRT() | Peak2D | static |
fullDimensionUnit(UInt const dim) | Peak2D | static |
fullDimensionUnitMZ() | Peak2D | static |
fullDimensionUnitRT() | Peak2D | static |
getAnnotationState() const | BaseFeature | |
getCharge() const | BaseFeature | |
getFeatureList() const | ConsensusFeature | |
getFeatures() const | ConsensusFeature | |
getIntensity() const | Peak2D | inline |
getIntensityRange() const | ConsensusFeature | |
getKeys(std::vector< String > &keys) const | MetaInfoInterface | |
getKeys(std::vector< UInt > &keys) const | MetaInfoInterface | |
getMetaValue(const String &name) const | MetaInfoInterface | |
getMetaValue(UInt index) const | MetaInfoInterface | |
getMZ() const | Peak2D | inline |
getPeptideIdentifications() const | BaseFeature | |
getPeptideIdentifications() | BaseFeature | |
getPosition() const | Peak2D | inline |
getPosition() | Peak2D | inline |
getPositionRange() const | ConsensusFeature | |
getQuality() const | BaseFeature | |
getRatios() const | ConsensusFeature | |
getRatios() | ConsensusFeature | |
getRT() const | Peak2D | inline |
getUniqueId() const | UniqueIdInterface | inline |
getWidth() const | BaseFeature | |
handles_ | ConsensusFeature | private |
HandleSetType typedef | ConsensusFeature | |
hasInvalidUniqueId() const | UniqueIdInterface | inline |
hasValidUniqueId() const | UniqueIdInterface | inline |
insert(const ConsensusFeature &cf) | ConsensusFeature | |
insert(const FeatureHandle &handle) | ConsensusFeature | |
insert(const HandleSetType &handle_set) | ConsensusFeature | |
insert(UInt64 map_index, const Peak2D &element, UInt64 element_index) | ConsensusFeature | |
insert(UInt64 map_index, const BaseFeature &element) | ConsensusFeature | |
intensity_ | Peak2D | protected |
IntensityType typedef | Peak2D | |
INVALID enum value | UniqueIdInterface | |
isMetaEmpty() const | MetaInfoInterface | |
isValid(UInt64 unique_id) | UniqueIdInterface | inlinestatic |
iterator typedef | ConsensusFeature | |
meta_ | MetaInfoInterface | protected |
MetaInfoInterface() | MetaInfoInterface | |
MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface | |
metaRegistry() | MetaInfoInterface | static |
metaValueExists(const String &name) const | MetaInfoInterface | |
metaValueExists(UInt index) const | MetaInfoInterface | |
MZ enum value | Peak2D | |
NamesOfAnnotationState | BaseFeature | static |
operator!=(const BaseFeature &rhs) const | BaseFeature | |
OpenMS::RichPeak2D::operator!=(const RichPeak2D &rhs) const | RichPeak2D | inline |
OpenMS::Peak2D::operator!=(const Peak2D &rhs) const | Peak2D | inline |
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface | |
operator=(const ConsensusFeature &rhs) | ConsensusFeature | |
OpenMS::BaseFeature::operator=(const BaseFeature &rhs) | BaseFeature | |
OpenMS::RichPeak2D::operator=(const RichPeak2D &rhs) | RichPeak2D | inline |
OpenMS::RichPeak2D::operator=(const Peak2D &rhs) | RichPeak2D | inline |
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs) | MetaInfoInterface | |
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface const &rhs) | UniqueIdInterface | inline |
operator==(const BaseFeature &rhs) const | BaseFeature | |
OpenMS::RichPeak2D::operator==(const RichPeak2D &rhs) const | RichPeak2D | inline |
OpenMS::Peak2D::operator==(const Peak2D &rhs) const | Peak2D | inline |
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface | |
OpenMS::UniqueIdInterface::operator==(UniqueIdInterface const &rhs) const | UniqueIdInterface | inline |
Peak2D() | Peak2D | inline |
Peak2D(const PositionType &pos, const IntensityType in) | Peak2D | inlineexplicit |
Peak2D(const Peak2D &p) | Peak2D | inline |
peptides_ | BaseFeature | protected |
position_ | Peak2D | protected |
PositionType typedef | Peak2D | |
quality_ | BaseFeature | protected |
QualityType typedef | BaseFeature | |
ratios_ | ConsensusFeature | private |
rbegin() const | ConsensusFeature | |
rbegin() | ConsensusFeature | |
removeMetaValue(const String &name) | MetaInfoInterface | |
removeMetaValue(UInt index) | MetaInfoInterface | |
rend() const | ConsensusFeature | |
rend() | ConsensusFeature | |
reverse_iterator typedef | ConsensusFeature | |
RichPeak2D() | RichPeak2D | inline |
RichPeak2D(const RichPeak2D &p) | RichPeak2D | inline |
RichPeak2D(const Peak2D &p) | RichPeak2D | inlineexplicit |
RichPeak2D(const PositionType &pos, const IntensityType in) | RichPeak2D | inlineexplicit |
RT enum value | Peak2D | |
setCharge(const ChargeType &ch) | BaseFeature | |
setIntensity(IntensityType intensity) | Peak2D | inline |
setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface | |
setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface | |
setMZ(CoordinateType coordinate) | Peak2D | inline |
setPeptideIdentifications(const std::vector< PeptideIdentification > &peptides) | BaseFeature | |
setPosition(const PositionType &position) | Peak2D | inline |
setQuality(QualityType q) | BaseFeature | |
setRatios(std::vector< Ratio > &rs) | ConsensusFeature | |
setRT(CoordinateType coordinate) | Peak2D | inline |
setUniqueId() | UniqueIdInterface | inline |
setUniqueId(UInt64 rhs) | UniqueIdInterface | inline |
setUniqueId(const String &rhs) | UniqueIdInterface | |
setWidth(WidthType fwhm) | BaseFeature | |
shortDimensionName(UInt const dim) | Peak2D | static |
shortDimensionNameMZ() | Peak2D | static |
shortDimensionNameRT() | Peak2D | static |
shortDimensionUnit(UInt const dim) | Peak2D | static |
shortDimensionUnitMZ() | Peak2D | static |
shortDimensionUnitRT() | Peak2D | static |
size() const | ConsensusFeature | |
SIZE_OF_ANNOTATIONSTATE enum value | BaseFeature | |
swap(UniqueIdInterface &from) | UniqueIdInterface | inline |
unique_id_ | UniqueIdInterface | protected |
UniqueIdInterface() | UniqueIdInterface | inline |
UniqueIdInterface(const UniqueIdInterface &rhs) | UniqueIdInterface | inline |
width_ | BaseFeature | protected |
WidthType typedef | BaseFeature | |
~BaseFeature() | BaseFeature | |
~ConsensusFeature() | ConsensusFeature | virtual |
~MetaInfoInterface() | MetaInfoInterface | |
~Peak2D() | Peak2D | inline |
~RichPeak2D() | RichPeak2D | inline |
~UniqueIdInterface() | UniqueIdInterface | inlinevirtual |