This is the complete list of members for EnzymaticDigestion, including all inherited members.
countMissedCleavages_(const std::vector< Size > &cleavage_positions, Size pep_start, Size pep_end) const | EnzymaticDigestion | inlineprotected |
digest(const AASequence &protein, std::vector< AASequence > &output) const | EnzymaticDigestion | |
digestUnmodifiedString(const StringView sequence, std::vector< StringView > &output, Size min_length=1, Size max_length=0) const | EnzymaticDigestion | |
EnzymaticDigestion() | EnzymaticDigestion | |
EnzymaticDigestion(const EnzymaticDigestion &rhs) | EnzymaticDigestion | |
enzyme_ | EnzymaticDigestion | protected |
getEnzymeName() const | EnzymaticDigestion | |
getMissedCleavages() const | EnzymaticDigestion | |
getSpecificity() const | EnzymaticDigestion | |
getSpecificityByName(const String &name) | EnzymaticDigestion | static |
isValidProduct(const AASequence &protein, Size pep_pos, Size pep_length, bool methionine_cleavage=false, bool ignore_missed_cleavages=true) const | EnzymaticDigestion | |
isValidProduct(const String &protein, Size pep_pos, Size pep_length, bool methionine_cleavage=false, bool ignore_missed_cleavages=true) const | EnzymaticDigestion | |
missed_cleavages_ | EnzymaticDigestion | protected |
NamesOfSpecificity | EnzymaticDigestion | static |
operator=(const EnzymaticDigestion &rhs) | EnzymaticDigestion | |
peptideCount(const AASequence &protein) | EnzymaticDigestion | |
setEnzyme(const String name) | EnzymaticDigestion | |
setMissedCleavages(Size missed_cleavages) | EnzymaticDigestion | |
setSpecificity(Specificity spec) | EnzymaticDigestion | |
SIZE_OF_SPECIFICITY enum value | EnzymaticDigestion | |
SPEC_FULL enum value | EnzymaticDigestion | |
SPEC_NONE enum value | EnzymaticDigestion | |
SPEC_SEMI enum value | EnzymaticDigestion | |
Specificity enum name | EnzymaticDigestion | |
specificity_ | EnzymaticDigestion | protected |
tokenize_(const String &protein) const | EnzymaticDigestion | protected |
UnspecificCleavage | EnzymaticDigestion | static |