This is the complete list of members for Enzyme, including all inherited members.
addSynonym(const String &synonym) | Enzyme | |
c_term_gain_ | Enzyme | protected |
cleavage_regex_ | Enzyme | protected |
comet_id_ | Enzyme | protected |
Enzyme(const Enzyme &enzyme) | Enzyme | |
Enzyme(const String &name, const String &cleavage_regex, const std::set< String > &synonyms=std::set< String >(), String regex_description="", EmpiricalFormula n_term_gain=EmpiricalFormula("H"), EmpiricalFormula c_term_gain=EmpiricalFormula("OH"), String psi_id="", String xtandem_id="", UInt comet_id=0, Int msgf_id=-1, UInt omssa_id=0) | Enzyme | explicit |
Enzyme() | Enzyme | protected |
getCometID() const | Enzyme | |
getCTermGain() const | Enzyme | |
getMSGFID() const | Enzyme | |
getName() const | Enzyme | |
getNTermGain() const | Enzyme | |
getOMSSAID() const | Enzyme | |
getPSIID() const | Enzyme | |
getRegEx() const | Enzyme | |
getRegExDescription() const | Enzyme | |
getSynonyms() const | Enzyme | |
getXTandemID() const | Enzyme | |
msgf_id_ | Enzyme | protected |
n_term_gain_ | Enzyme | protected |
name_ | Enzyme | protected |
omssa_id_ | Enzyme | protected |
operator!=(const Enzyme &enzyme) const | Enzyme | |
operator!=(String cleavage_regex) const | Enzyme | |
operator<(const Enzyme &enzyme) const | Enzyme | |
operator<<(std::ostream &os, const Enzyme &enzyme) | Enzyme | friend |
operator=(const Enzyme &enzyme) | Enzyme | |
operator==(const Enzyme &enzyme) const | Enzyme | |
operator==(String cleavage_regex) const | Enzyme | |
psi_id_ | Enzyme | protected |
regex_description_ | Enzyme | protected |
setCometID(UInt value) | Enzyme | |
setCTermGain(EmpiricalFormula value) | Enzyme | |
setMSGFID(Int value) | Enzyme | |
setName(const String &name) | Enzyme | |
setNTermGain(EmpiricalFormula value) | Enzyme | |
setOMSSAID(UInt value) | Enzyme | |
setPSIID(String value) | Enzyme | |
setRegEx(const String &cleavage_regex) | Enzyme | |
setRegExDescription(String value) | Enzyme | |
setSynonyms(const std::set< String > &synonyms) | Enzyme | |
setXTandemID(String value) | Enzyme | |
synonyms_ | Enzyme | protected |
xtandem_id_ | Enzyme | protected |
~Enzyme() | Enzyme | virtual |