| compressTrieDB(const String &database_filename, const String &index_filename, std::vector< Size > &wanted_records, const String &snd_database_filename, const String &snd_index_filename, bool append=false) | InspectOutfile | |
| db_pos_length_ | InspectOutfile | protectedstatic |
| generateTrieDB(const String &source_database_filename, const String &database_filename, const String &index_filename, bool append=false, const String species="") | InspectOutfile | |
| getACAndACType(String line, String &accession, String &accession_type) | InspectOutfile | |
| getExperiment(PeakMap &exp, String &type, const String &in_filename) | InspectOutfile | inline |
| getLabels(const String &source_database_filename, String &ac_label, String &sequence_start_label, String &sequence_end_label, String &comment_label, String &species_label) | InspectOutfile | |
| getPrecursorRTandMZ(const std::vector< std::pair< String, std::vector< std::pair< Size, Size > > > > &files_and_peptide_identification_with_scan_number, std::vector< PeptideIdentification > &ids) | InspectOutfile | |
| getSearchEngineAndVersion(const String &cmd_output, ProteinIdentification &protein_identification) | InspectOutfile | |
| getSequences(const String &database_filename, const std::map< Size, Size > &wanted_records, std::vector< String > &sequences) | InspectOutfile | |
| getWantedRecords(const String &result_filename, double p_value_threshold) | InspectOutfile | |
| InspectOutfile() | InspectOutfile | |
| InspectOutfile(const InspectOutfile &inspect_outfile) | InspectOutfile | |
| load(const String &result_filename, std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &protein_identification, const double p_value_threshold, const String &database_filename="") | InspectOutfile | |
| operator=(const InspectOutfile &inspect_outfile) | InspectOutfile | |
| operator==(const InspectOutfile &inspect_outfile) const | InspectOutfile | |
| protein_name_length_ | InspectOutfile | protectedstatic |
| readOutHeader(const String &filename, const String &header_line, Int &spectrum_file_column, Int &scan_column, Int &peptide_column, Int &protein_column, Int &charge_column, Int &MQ_score_column, Int &p_value_column, Int &record_number_column, Int &DB_file_pos_column, Int &spec_file_pos_column, Size &number_of_columns) | InspectOutfile | |
| record_length_ | InspectOutfile | protectedstatic |
| score_type_ | InspectOutfile | protectedstatic |
| trie_db_pos_length_ | InspectOutfile | protectedstatic |
| trie_delimiter_ | InspectOutfile | protectedstatic |
| ~InspectOutfile() | InspectOutfile | virtual |