| applyTransformation(std::vector< Precursor > &pcs, const MZTrafoModel &trafo) | InternalCalibration | static |
| applyTransformation(PeakMap::SpectrumType &spec, const IntList &target_mslvl, const MZTrafoModel &trafo) | InternalCalibration | static |
| applyTransformation(PeakMap &exp, const IntList &target_mslvl, const MZTrafoModel &trafo) | InternalCalibration | static |
| applyTransformation_(PeakMap::SpectrumType &spec, const MZTrafoModel &trafo) | InternalCalibration | protectedstatic |
| cal_data_ | InternalCalibration | private |
| calibrate(PeakMap &exp, const IntList &target_mslvl, MZTrafoModel::MODELTYPE model_type, double rt_chunk, bool use_RANSAC, double post_ppm_median, double post_ppm_MAD, const String &file_models="", const String &file_models_plot="", const String &file_residuals="", const String &file_residuals_plot="", const String &rscript_executable="Rscript") | InternalCalibration | |
| CMD enum value | ProgressLogger | |
| current_logger_ | ProgressLogger | mutableprotected |
| endProgress() const | ProgressLogger | |
| fillCalibrants(const PeakMap exp, const std::vector< InternalCalibration::LockMass > &ref_masses, double tol_ppm, bool lock_require_mono, bool lock_require_iso, CalibrationData &failed_lock_masses, bool verbose=true) | InternalCalibration | |
| fillCalibrants(const FeatureMap &fm, double tol_ppm) | InternalCalibration | |
| fillCalibrants(const std::vector< PeptideIdentification > &pep_ids, double tol_ppm) | InternalCalibration | |
| fillIDs_(const std::vector< PeptideIdentification > &pep_ids, double tol_ppm) | InternalCalibration | protected |
| getCalibrationPoints() const | InternalCalibration | |
| getLogType() const | ProgressLogger | |
| GUI enum value | ProgressLogger | |
| InternalCalibration() | InternalCalibration | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| NONE enum value | ProgressLogger | |
| operator=(const ProgressLogger &other) | ProgressLogger | |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| setLogType(LogType type) const | ProgressLogger | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| type_ | ProgressLogger | mutableprotected |
| ~InternalCalibration() | InternalCalibration | inline |
| ~ProgressLogger() | ProgressLogger | |