| accessions_ | XQuestResultXMLHandler | private |
| ActionMode enum name | XMLHandler | |
| addMetaValues_(MetaInfoInterface &meta_info_interface) | XQuestResultXMLHandler | private |
| asBool_(const String &in) | XMLHandler | inlineprotected |
| asDateTime_(String date_string) | XMLHandler | inlineprotected |
| asDouble_(const String &in) | XMLHandler | inlineprotected |
| asFloat_(const String &in) | XMLHandler | inlineprotected |
| asInt_(const String &in) | XMLHandler | inlineprotected |
| asInt_(const XMLCh *in) | XMLHandler | inlineprotected |
| asUInt_(const String &in) | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| characters(const XMLCh *const chars, const XMLSize_t length) | XMLHandler | virtual |
| charges_ | XQuestResultXMLHandler | private |
| csms_ | XQuestResultXMLHandler | private |
| current_spectrum_search_ | XQuestResultXMLHandler | private |
| cv_terms_ | XMLHandler | protected |
| cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected |
| decoy_string | XQuestResultXMLHandler | static |
| endElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname) | XQuestResultXMLHandler | virtual |
| enzymes | XQuestResultXMLHandler | static |
| enzymes_db_ | XQuestResultXMLHandler | private |
| equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
| error(const xercesc::SAXParseException &exception) | XMLHandler | |
| error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| error_message_ | XMLHandler | mutableprotected |
| errorString() | XMLHandler | |
| extractDateTime_(const String &xquest_datetime_string, DateTime &date_time) | XQuestResultXMLHandler | inlineprivate |
| fatalError(const xercesc::SAXParseException &exception) | XMLHandler | |
| fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| file_ | XMLHandler | protected |
| getLinkPosition_(const xercesc::Attributes &attributes, std::pair< SignedSize, SignedSize > &pair) | XQuestResultXMLHandler | private |
| getMaxScore() const | XQuestResultXMLHandler | |
| getMinScore() const | XQuestResultXMLHandler | |
| getNumberOfHits() const | XQuestResultXMLHandler | |
| is_openproxl_ | XQuestResultXMLHandler | private |
| LOAD enum value | XMLHandler | |
| load_to_peptideHit_ | XQuestResultXMLHandler | private |
| max_precursor_charge_ | XQuestResultXMLHandler | private |
| max_score_ | XQuestResultXMLHandler | private |
| min_n_ions_per_spectrum_ | XQuestResultXMLHandler | private |
| min_precursor_charge_ | XQuestResultXMLHandler | private |
| min_score_ | XQuestResultXMLHandler | private |
| monolinks_masses_ | XQuestResultXMLHandler | private |
| months | XQuestResultXMLHandler | static |
| n_hits_ | XQuestResultXMLHandler | private |
| open_tags_ | XMLHandler | protected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| peptide_id_meta_values_ | XQuestResultXMLHandler | private |
| prot_ids_ | XQuestResultXMLHandler | private |
| reset() | XMLHandler | |
| rt_light_ | XQuestResultXMLHandler | private |
| setMetaValue_(const String &key, const DataValue &datavalue, PeptideIdentification &pep_id, PeptideHit &alpha) | XQuestResultXMLHandler | private |
| setMetaValue_(const String &key, const DataValue &datavalue, PeptideIdentification &pep_id, PeptideHit &alpha, PeptideHit &beta) | XQuestResultXMLHandler | private |
| setPeptideEvidence_(const String &prot_string, PeptideHit &pep_hit) | XQuestResultXMLHandler | private |
| sm_ | XMLHandler | protected |
| startElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname, const xercesc::Attributes &attributes) | XQuestResultXMLHandler | virtual |
| STORE enum value | XMLHandler | |
| version_ | XMLHandler | protected |
| warning(const xercesc::SAXParseException &exception) | XMLHandler | |
| warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| writeTo(std::ostream &) | XMLHandler | virtual |
| writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
| writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
| XMLHandler(const String &filename, const String &version) | XMLHandler | |
| XQuestResultXMLHandler(const String &filename, std::vector< std::vector< PeptideIdentification > > &csms, std::vector< ProteinIdentification > &prot_ids, Size min_n_ions_per_spectrum, bool load_to_peptideHit_) | XQuestResultXMLHandler | |
| ~XMLHandler() | XMLHandler | virtual |
| ~XQuestResultXMLHandler() | XQuestResultXMLHandler | virtual |