| cmpOligos_(std::pair< Int, double > a, std::pair< Int, double > b) | LibSVMEncoder | privatestatic |
| destroyProblem(svm_problem *problem) | LibSVMEncoder | static |
| encodeCompositionVector(const String &sequence, std::vector< std::pair< Int, double > > &encoded_vector, const String &allowed_characters="ACDEFGHIKLMNPQRSTVWY") | LibSVMEncoder | |
| encodeCompositionVectors(const std::vector< String > &sequences, const String &allowed_characters, std::vector< std::vector< std::pair< Int, double > > > &composition_vectors) | LibSVMEncoder | |
| encodeLibSVMProblem(const std::vector< svm_node *> &vectors, std::vector< double > &labels) | LibSVMEncoder | |
| encodeLibSVMProblemWithCompositionAndLengthVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters, UInt maximum_sequence_length) | LibSVMEncoder | |
| encodeLibSVMProblemWithCompositionLengthAndWeightVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters) | LibSVMEncoder | |
| encodeLibSVMProblemWithCompositionVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters) | LibSVMEncoder | |
| encodeLibSVMProblemWithOligoBorderVectors(const std::vector< String > &sequences, std::vector< double > &labels, UInt k_mer_length, const String &allowed_characters, UInt border_length, bool strict=false, bool unpaired=false, bool length_encoding=false) | LibSVMEncoder | |
| encodeLibSVMVector(const std::vector< std::pair< Int, double > > &feature_vector) | LibSVMEncoder | |
| encodeLibSVMVectors(const std::vector< std::vector< std::pair< Int, double > > > &feature_vectors, std::vector< svm_node *> &libsvm_vectors) | LibSVMEncoder | |
| encodeOligo(const AASequence &sequence, UInt k_mer_length, const String &allowed_characters, std::vector< std::pair< Int, double > > &values, bool is_right_border=false) | LibSVMEncoder | |
| encodeOligoBorders(String sequence, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::pair< Int, double > > &libsvm_vector, bool strict=false, bool unpaired=false, bool length_encoding=false) | LibSVMEncoder | |
| encodeProblemWithOligoBorderVectors(const std::vector< AASequence > &sequences, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::vector< std::pair< Int, double > > > &vectors) | LibSVMEncoder | |
| LibSVMEncoder() | LibSVMEncoder | |
| libSVMVectorsToString(svm_problem *vector, String &output) | LibSVMEncoder | |
| libSVMVectorToString(svm_node *vector, String &output) | LibSVMEncoder | |
| loadLibSVMProblem(const String &filename) | LibSVMEncoder | |
| storeLibSVMProblem(const String &filename, const svm_problem *problem) const | LibSVMEncoder | |
| ~LibSVMEncoder() | LibSVMEncoder | |