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MRMDecoy Member List

This is the complete list of members for MRMDecoy, including all inherited members.

AASequenceIdentity(const String &sequence, const String &decoy)MRMDecoy
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() constProgressLogger
find_all_tryptic(std::string sequence)MRMDecoy
generateDecoys(OpenMS::TargetedExperiment &exp, OpenMS::TargetedExperiment &dec, String method, String decoy_tag, double identity_threshold, int max_attempts, double mz_threshold, double mz_shift, bool exclude_similar, double similarity_threshold, bool remove_CNterm_mods, double precursor_mass_shift, std::vector< String > fragment_types, std::vector< size_t > fragment_charges, bool enable_specific_losses, bool enable_unspecific_losses, bool remove_unannotated, int round_decPow=-4)MRMDecoy
getLogType() constProgressLogger
GUI enum valueProgressLogger
has_CNterminal_mods(const OpenMS::TargetedExperiment::Peptide &peptide)MRMDecoy
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MRMDecoy()MRMDecoyinline
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
PeptideTransitionMapType typedefMRMDecoy
PeptideVectorType typedefMRMDecoy
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
ProteinVectorType typedefMRMDecoy
pseudoreversePeptide(OpenMS::TargetedExperiment::Peptide peptide)MRMDecoy
recursion_depth_ProgressLoggerprotectedstatic
reversePeptide(OpenMS::TargetedExperiment::Peptide peptide)MRMDecoy
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
shufflePeptide(OpenMS::TargetedExperiment::Peptide peptide, double identity_threshold, int seed=-1, int max_attempts=10, bool replace_aa_instead_append=false)MRMDecoy
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
TransitionVectorType typedefMRMDecoy
type_ProgressLoggermutableprotected
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:10 using doxygen 1.8.13