| boundary_ | MascotInfile | protected |
| charges_ | MascotInfile | protected |
| cleavage_ | MascotInfile | protected |
| CMD enum value | ProgressLogger | |
| current_logger_ | ProgressLogger | mutableprotected |
| db_ | MascotInfile | protected |
| endProgress() const | ProgressLogger | |
| form_version_ | MascotInfile | protected |
| getBoundary() | MascotInfile | |
| getCharges() | MascotInfile | |
| getCleavage() | MascotInfile | |
| getDB() | MascotInfile | |
| getFormVersion() | MascotInfile | |
| getHits() | MascotInfile | |
| getInstrument() | MascotInfile | |
| getLogType() const | ProgressLogger | |
| getMassType() | MascotInfile | |
| getMissedCleavages() | MascotInfile | |
| getModifications() | MascotInfile | |
| getNextSpectrum_(std::istream &is, std::vector< std::pair< double, double > > &spectrum, UInt &charge, double &precursor_mz, double &precursor_int, double &rt, String &title) | MascotInfile | protected |
| getPeakMassTolerance() | MascotInfile | |
| getPrecursorMassTolerance() | MascotInfile | |
| getSearchType() | MascotInfile | |
| getTaxonomy() | MascotInfile | |
| getVariableModifications() | MascotInfile | |
| GUI enum value | ProgressLogger | |
| hits_ | MascotInfile | protected |
| instrument_ | MascotInfile | protected |
| ion_mass_tolerance_ | MascotInfile | protected |
| last_invoke_ | ProgressLogger | mutableprotected |
| load(const String &filename, MapType &exp) | MascotInfile | inline |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| MascotInfile() | MascotInfile | |
| mass_type_ | MascotInfile | protected |
| missed_cleavages_ | MascotInfile | protected |
| mods_ | MascotInfile | protected |
| mz_ | MascotInfile | protected |
| NONE enum value | ProgressLogger | |
| operator=(const ProgressLogger &other) | ProgressLogger | |
| precursor_mass_tolerance_ | MascotInfile | protected |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| retention_time_ | MascotInfile | protected |
| search_title_ | MascotInfile | protected |
| search_type_ | MascotInfile | protected |
| setBoundary(const String &boundary) | MascotInfile | |
| setCharges(std::vector< Int > &charges) | MascotInfile | |
| setCleavage(const String &cleavage) | MascotInfile | |
| setDB(const String &db) | MascotInfile | |
| setFormVersion(const String &form_version) | MascotInfile | |
| setHits(const String &hits) | MascotInfile | |
| setInstrument(const String &instrument) | MascotInfile | |
| setLogType(LogType type) const | ProgressLogger | |
| setMassType(const String &mass_type) | MascotInfile | |
| setMissedCleavages(UInt missed_cleavages) | MascotInfile | |
| setModifications(const std::vector< String > &mods) | MascotInfile | |
| setPeakMassTolerance(float ion_mass_tolerance) | MascotInfile | |
| setPrecursorMassTolerance(float precursor_mass_tolerance) | MascotInfile | |
| setProgress(SignedSize value) const | ProgressLogger | |
| setSearchType(const String &search_type) | MascotInfile | |
| setTaxonomy(const String &taxonomy) | MascotInfile | |
| setVariableModifications(const std::vector< String > &mods) | MascotInfile | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| store(const String &filename, const PeakSpectrum &spec, double mz, double retention_time, String search_title) | MascotInfile | |
| store(const String &filename, const PeakMap &experiment, String search_title) | MascotInfile | |
| taxonomy_ | MascotInfile | protected |
| type_ | ProgressLogger | mutableprotected |
| variable_mods_ | MascotInfile | protected |
| writeHeader_(FILE *fp) | MascotInfile | protected |
| writeMSExperiment_(FILE *fp, const String &filename, const PeakMap &experiment) | MascotInfile | protected |
| writeParameterHeader_(const String &name, FILE *fp, bool line_break=true) | MascotInfile | protected |
| writeSpectrum_(FILE *fp, const String &filename, const PeakSpectrum &peaks) | MascotInfile | protected |
| ~MascotInfile() | MascotInfile | virtual |
| ~ProgressLogger() | ProgressLogger | |