| calc_correct_ | PosteriorErrorProbabilityModel | private |
| calc_incorrect_ | PosteriorErrorProbabilityModel | private |
| check_defaults_ | DefaultParamHandler | protected |
| computeMaxLikelihood(std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
| computeProbability(double score) | PosteriorErrorProbabilityModel | |
| correctly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| fillDensities(std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
| fit(std::vector< double > &search_engine_scores) | PosteriorErrorProbabilityModel | |
| fit(std::vector< double > &search_engine_scores, std::vector< double > &probabilities) | PosteriorErrorProbabilityModel | |
| getBothGnuplotFormula(const GaussFitter::GaussFitResult &incorrect, const GaussFitter::GaussFitResult &correct) const | PosteriorErrorProbabilityModel | |
| getCorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline |
| getDefaults() const | DefaultParamHandler | |
| getGauss(double x, const GaussFitter::GaussFitResult ¶ms) | PosteriorErrorProbabilityModel | inline |
| getGaussGnuplotFormula(const GaussFitter::GaussFitResult ¶ms) const | PosteriorErrorProbabilityModel | |
| getGumbel(double x, const GaussFitter::GaussFitResult ¶ms) | PosteriorErrorProbabilityModel | inline |
| getGumbelGnuplotFormula(const GaussFitter::GaussFitResult ¶ms) const | PosteriorErrorProbabilityModel | |
| getIncorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline |
| getName() const | DefaultParamHandler | |
| getNegativeGnuplotFormula_ | PosteriorErrorProbabilityModel | private |
| getNegativePrior() const | PosteriorErrorProbabilityModel | inline |
| getParameters() const | DefaultParamHandler | |
| getPositiveGnuplotFormula_ | PosteriorErrorProbabilityModel | private |
| getSmallestScore() | PosteriorErrorProbabilityModel | inline |
| getSubsections() const | DefaultParamHandler | |
| incorrectly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private |
| initPlots(std::vector< double > &x_scores) | PosteriorErrorProbabilityModel | |
| max_correctly_ | PosteriorErrorProbabilityModel | private |
| max_incorrectly_ | PosteriorErrorProbabilityModel | private |
| negative_prior_ | PosteriorErrorProbabilityModel | private |
| one_minus_sum_post(std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
| operator=(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| plotTargetDecoyEstimation(std::vector< double > &target, std::vector< double > &decoy) | PosteriorErrorProbabilityModel | |
| PosteriorErrorProbabilityModel() | PosteriorErrorProbabilityModel | |
| PosteriorErrorProbabilityModel(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| smallest_score_ | PosteriorErrorProbabilityModel | private |
| subsections_ | DefaultParamHandler | protected |
| sum_neg_sigma(std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density, double positive_mean) | PosteriorErrorProbabilityModel | |
| sum_neg_x0(std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
| sum_pos_sigma(std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density, double positive_mean) | PosteriorErrorProbabilityModel | |
| sum_pos_x0(std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
| sum_post(std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
| tryGnuplot(const String &gp_file) | PosteriorErrorProbabilityModel | |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~PosteriorErrorProbabilityModel() | PosteriorErrorProbabilityModel | virtual |