This is the complete list of members for ModificationsDB, including all inherited members.
| addModification(ResidueModification *new_mod) | ModificationsDB | |
| CrossLinksDB class | ModificationsDB | friend |
| findModificationIndex(const String &mod_name) const | ModificationsDB | |
| getAllSearchModifications(std::vector< String > &modifications) const | ModificationsDB | |
| getBestModificationByDiffMonoMass(double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| getBestModificationByMonoMass(double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| getInstance() | ModificationsDB | inlinestatic |
| getModification(Size index) const | ModificationsDB | |
| getModification(const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB | |
| getNumberOfModifications() const | ModificationsDB | |
| has(String modification) const | ModificationsDB | |
| modification_names_ | ModificationsDB | protected |
| ModificationsDB() | ModificationsDB | private |
| ModificationsDB(const ModificationsDB &residue_db) | ModificationsDB | private |
| mods_ | ModificationsDB | protected |
| operator=(const ModificationsDB &aa) | ModificationsDB | private |
| readFromOBOFile(const String &filename) | ModificationsDB | |
| readFromUnimodXMLFile(const String &filename) | ModificationsDB | |
| residuesMatch_(const String &residue, char origin) const | ModificationsDB | protected |
| searchModifications(std::set< const ResidueModification *> &mods, const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB | |
| searchModificationsByDiffMonoMass(std::vector< String > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| ~ModificationsDB() | ModificationsDB | privatevirtual |