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MultiplexFiltering Member List

This is the complete list of members for MultiplexFiltering, including all inherited members.

averagine_similarity_MultiplexFilteringprotected
averagine_similarity_scaling_MultiplexFilteringprotected
averagine_type_MultiplexFilteringprotected
averagineSimilarityFilter_(const MultiplexIsotopicPeakPattern &pattern, const std::vector< double > &intensities_actual, int peaks_found_in_all_peptides_spline, double mz) constMultiplexFilteringprotected
blacklist_MultiplexFilteringprotected
blacklistPeaks_(const MultiplexIsotopicPeakPattern &pattern, int spectrum, const std::vector< int > &mz_shifts_actual_indices, int peaks_found_in_all_peptides_spline)MultiplexFilteringprotected
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() constProgressLogger
exp_picked_MultiplexFilteringprotected
getAveragineSimilarity_(const std::vector< double > &pattern, double m) constMultiplexFilteringprotected
getLogType() constProgressLogger
getPatternSimilarity_(const std::vector< double > &pattern1, const std::vector< double > &pattern2) constMultiplexFilteringprotected
getPeakIndex_(const std::vector< double > &peak_position, int start, double mz, double scaling) constMultiplexFilteringprotected
GUI enum valueProgressLogger
intensity_cutoff_MultiplexFilteringprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
missing_peaks_MultiplexFilteringprotected
monoIsotopicPeakIntensityFilter_(const MultiplexIsotopicPeakPattern &pattern, int spectrum_index, const std::vector< int > &mz_shifts_actual_indices) constMultiplexFilteringprotected
MultiplexFiltering(const PeakMap &exp_picked, const std::vector< MultiplexIsotopicPeakPattern > patterns, int peaks_per_peptide_min, int peaks_per_peptide_max, bool missing_peaks, double intensity_cutoff, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling, String averagine_type="peptide")MultiplexFiltering
mz_tolerance_MultiplexFilteringprotected
mz_tolerance_unit_MultiplexFilteringprotected
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
patterns_MultiplexFilteringprotected
peaks_per_peptide_max_MultiplexFilteringprotected
peaks_per_peptide_min_MultiplexFilteringprotected
peptide_similarity_MultiplexFilteringprotected
peptideSimilarityFilter_(const MultiplexIsotopicPeakPattern &pattern, const std::vector< double > &intensities_actual, int peaks_found_in_all_peptides_spline) constMultiplexFilteringprotected
positionsAndBlacklistFilter_(const MultiplexIsotopicPeakPattern &pattern, int spectrum, const std::vector< double > &peak_position, int peak, std::vector< double > &mz_shifts_actual, std::vector< int > &mz_shifts_actual_indices) constMultiplexFilteringprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
registry_MultiplexFilteringprotected
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
type_ProgressLoggermutableprotected
zerothPeakFilter_(const MultiplexIsotopicPeakPattern &pattern, const std::vector< double > &intensities_actual) constMultiplexFilteringprotected
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:11 using doxygen 1.8.13