| add_up_spectra_ | OpenSwathScoring | private |
| calculateChromatographicIdScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< std::string > &native_ids_identification, const std::vector< std::string > &native_ids_detection, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators, OpenSwath_Scores &scores) | OpenSwathScoring | |
| calculateChromatographicScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< std::string > &native_ids, const std::string &precursor_chrom_id, const std::vector< double > &normalized_library_intensity, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators, OpenSwath_Scores &scores) | OpenSwathScoring | |
| calculateDIAIdScores(OpenSwath::IMRMFeature *imrmfeature, const TransitionType &transition, std::vector< OpenSwath::SwathMap > swath_maps, OpenMS::DIAScoring &diascoring, OpenSwath_Scores &scores) | OpenSwathScoring | |
| calculateDIAScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< TransitionType > &transitions, std::vector< OpenSwath::SwathMap > swath_maps, OpenSwath::SpectrumAccessPtr ms1_map, OpenMS::DIAScoring &diascoring, const CompoundType &compound, OpenSwath_Scores &scores) | OpenSwathScoring | |
| calculateLibraryScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< TransitionType > &transitions, const CompoundType &compound, const double normalized_feature_rt, OpenSwath_Scores &scores) | OpenSwathScoring | |
| calculatePrecursorDIAScores(OpenSwath::SpectrumAccessPtr ms1_map, OpenMS::DIAScoring &diascoring, double precursor_mz, double rt, const CompoundType &compound, OpenSwath_Scores &scores) | OpenSwathScoring | |
| CompoundType typedef | OpenSwathScoring | private |
| getAddedSpectra_(OpenSwath::SpectrumAccessPtr swath_map, double RT, int nr_spectra_to_add) | OpenSwathScoring | |
| getAddedSpectra_(std::vector< OpenSwath::SwathMap > swath_maps, double RT, int nr_spectra_to_add) | OpenSwathScoring | |
| getNormalized_library_intensities_(const std::vector< TransitionType > &transitions, std::vector< double > &normalized_library_intensity) | OpenSwathScoring | |
| initialize(double rt_normalization_factor, int add_up_spectra, double spacing_for_spectra_resampling, OpenSwath_Scores_Usage &su) | OpenSwathScoring | |
| OpenSwathScoring() | OpenSwathScoring | |
| rt_normalization_factor_ | OpenSwathScoring | private |
| spacing_for_spectra_resampling_ | OpenSwathScoring | private |
| su_ | OpenSwathScoring | private |
| TransitionType typedef | OpenSwathScoring | private |
| ~OpenSwathScoring() | OpenSwathScoring | |