| addCOMETFeatures(std::vector< PeptideIdentification > &peptide_ids, StringList &feature_set) | PercolatorFeatureSetHelper | static |
| addCONCATSEFeatures(std::vector< PeptideIdentification > &peptide_id_list, StringList &search_engines_used, StringList &feature_set) | PercolatorFeatureSetHelper | static |
| addMASCOTFeatures(std::vector< PeptideIdentification > &peptide_ids, StringList &feature_set) | PercolatorFeatureSetHelper | static |
| addMSGFFeatures(std::vector< PeptideIdentification > &peptide_ids, StringList &feature_set) | PercolatorFeatureSetHelper | static |
| addMULTISEFeatures(std::vector< PeptideIdentification > &peptide_ids, StringList &search_engines_used, StringList &feature_set, bool complete_only=true, bool limits_imputation=false) | PercolatorFeatureSetHelper | static |
| addXTANDEMFeatures(std::vector< PeptideIdentification > &peptide_ids, StringList &feature_set) | PercolatorFeatureSetHelper | static |
| assignDeltaScore_(std::vector< PeptideHit > &hits, String score_ref, String output_ref) | PercolatorFeatureSetHelper | protectedstatic |
| checkExtraFeatures(const std::vector< PeptideHit > &psms, StringList &extra_features) | PercolatorFeatureSetHelper | static |
| concatMULTISEPeptideIds(std::vector< PeptideIdentification > &all_peptide_ids, std::vector< PeptideIdentification > &new_peptide_ids, String search_engine) | PercolatorFeatureSetHelper | static |
| getScanMergeKey_(std::vector< PeptideIdentification >::iterator it, std::vector< PeptideIdentification >::iterator start) | PercolatorFeatureSetHelper | protectedstatic |
| mergeMULTISEPeptideIds(std::vector< PeptideIdentification > &all_peptide_ids, std::vector< PeptideIdentification > &new_peptide_ids, String search_engine) | PercolatorFeatureSetHelper | static |
| mergeMULTISEProteinIds(std::vector< ProteinIdentification > &all_protein_ids, std::vector< ProteinIdentification > &new_protein_ids) | PercolatorFeatureSetHelper | static |
| rescaleFragmentFeature_(double featureValue, int NumMatchedMainIons) | PercolatorFeatureSetHelper | protectedstatic |