| bin_masses_ | PrecursorIonSelectionPreprocessing | protected |
| check_defaults_ | DefaultParamHandler | protected |
| counter_ | PrecursorIonSelectionPreprocessing | protected |
| dbPreprocessing(String db_path, bool save=true) | PrecursorIonSelectionPreprocessing | |
| dbPreprocessing(String db_path, String rt_model_path, String dt_model_path, bool save=true) | PrecursorIonSelectionPreprocessing | |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| f_max_ | PrecursorIonSelectionPreprocessing | protected |
| filterTaxonomyIdentifier_(FASTAFile::FASTAEntry &entry) | PrecursorIonSelectionPreprocessing | protected |
| fixed_modifications_ | PrecursorIonSelectionPreprocessing | protected |
| fixed_mods_ | PrecursorIonSelectionPreprocessing | protected |
| getDefaults() const | DefaultParamHandler | |
| getFixedModifications() | PrecursorIonSelectionPreprocessing | inline |
| getGaussMu() | PrecursorIonSelectionPreprocessing | inline |
| getGaussSigma() | PrecursorIonSelectionPreprocessing | inline |
| getMasses(String acc) const | PrecursorIonSelectionPreprocessing | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getProteinPeptideSequenceMap() const | PrecursorIonSelectionPreprocessing | |
| getProteinPTMap() const | PrecursorIonSelectionPreprocessing | |
| getProteinRTMap() const | PrecursorIonSelectionPreprocessing | |
| getProtMasses() const | PrecursorIonSelectionPreprocessing | |
| getPT(String prot_id, Size peptide_index) | PrecursorIonSelectionPreprocessing | |
| getRT(String prot_id, Size peptide_index) | PrecursorIonSelectionPreprocessing | |
| getRTProbability(String prot_id, Size peptide_index, Feature &feature) | PrecursorIonSelectionPreprocessing | |
| getRTProbability(double pred_rt, Feature &feature) | PrecursorIonSelectionPreprocessing | |
| getRTProbability_(double min_obs_rt, double max_obs_rt, double pred_rt) | PrecursorIonSelectionPreprocessing | protected |
| getScanNumber_(double rt) | PrecursorIonSelectionPreprocessing | protected |
| getSubsections() const | DefaultParamHandler | |
| getWeight(double mass) | PrecursorIonSelectionPreprocessing | |
| loadPreprocessedDB_(String path) | PrecursorIonSelectionPreprocessing | protected |
| loadPreprocessing() | PrecursorIonSelectionPreprocessing | |
| masses_ | PrecursorIonSelectionPreprocessing | protected |
| mu_ | PrecursorIonSelectionPreprocessing | protected |
| operator=(const PrecursorIonSelectionPreprocessing &source) | PrecursorIonSelectionPreprocessing | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| PrecursorIonSelectionPreprocessing() | PrecursorIonSelectionPreprocessing | |
| PrecursorIonSelectionPreprocessing(const PrecursorIonSelectionPreprocessing &source) | PrecursorIonSelectionPreprocessing | |
| prot_masses_ | PrecursorIonSelectionPreprocessing | protected |
| prot_peptide_seq_map_ | PrecursorIonSelectionPreprocessing | protected |
| pt_prot_map_ | PrecursorIonSelectionPreprocessing | protected |
| rt_prot_map_ | PrecursorIonSelectionPreprocessing | protected |
| savePreprocessedDB_(String db_path, String path) | PrecursorIonSelectionPreprocessing | protected |
| savePreprocessedDBWithRT_(String db_path, String path) | PrecursorIonSelectionPreprocessing | protected |
| sequences_ | PrecursorIonSelectionPreprocessing | protected |
| setFixedModifications(StringList &modifications) | PrecursorIonSelectionPreprocessing | |
| setGaussianParameters(double mu, double sigma) | PrecursorIonSelectionPreprocessing | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| sigma_ | PrecursorIonSelectionPreprocessing | protected |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() | PrecursorIonSelectionPreprocessing | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~PrecursorIonSelectionPreprocessing() | PrecursorIonSelectionPreprocessing | |