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OpenMS
ProteinIdentification
ProteinIdentification Member List
This is the complete list of members for
ProteinIdentification
, including all inherited members.
assignRanks
()
ProteinIdentification
AVERAGE
enum value
ProteinIdentification
clearMetaInfo
()
MetaInfoInterface
computeCoverage
(const std::vector< PeptideIdentification > &pep_ids)
ProteinIdentification
createIfNotExists_
()
MetaInfoInterface
inline
protected
date_
ProteinIdentification
protected
findHit
(const String &accession)
ProteinIdentification
getDateTime
() const
ProteinIdentification
getHits
() const
ProteinIdentification
getHits
()
ProteinIdentification
getIdentifier
() const
ProteinIdentification
getIndistinguishableProteins
() const
ProteinIdentification
getIndistinguishableProteins
()
ProteinIdentification
getKeys
(std::vector< String > &keys) const
MetaInfoInterface
getKeys
(std::vector< UInt > &keys) const
MetaInfoInterface
getMetaValue
(const String &name) const
MetaInfoInterface
getMetaValue
(UInt index) const
MetaInfoInterface
getPrimaryMSRunPath
(StringList &toFill) const
ProteinIdentification
getProteinGroups
() const
ProteinIdentification
getProteinGroups
()
ProteinIdentification
getScoreType
() const
ProteinIdentification
getSearchEngine
() const
ProteinIdentification
getSearchEngineVersion
() const
ProteinIdentification
getSearchParameters
() const
ProteinIdentification
getSignificanceThreshold
() const
ProteinIdentification
higher_score_better_
ProteinIdentification
protected
HitType
typedef
ProteinIdentification
id_
ProteinIdentification
protected
indistinguishable_proteins_
ProteinIdentification
protected
insertHit
(const ProteinHit &input)
ProteinIdentification
insertIndistinguishableProteins
(const ProteinGroup &group)
ProteinIdentification
insertProteinGroup
(const ProteinGroup &group)
ProteinIdentification
isHigherScoreBetter
() const
ProteinIdentification
isMetaEmpty
() const
MetaInfoInterface
meta_
MetaInfoInterface
protected
MetaInfoInterface
()
MetaInfoInterface
MetaInfoInterface
(const MetaInfoInterface &rhs)
MetaInfoInterface
metaRegistry
()
MetaInfoInterface
static
metaValueExists
(const String &name) const
MetaInfoInterface
metaValueExists
(UInt index) const
MetaInfoInterface
MONOISOTOPIC
enum value
ProteinIdentification
NamesOfPeakMassType
ProteinIdentification
static
operator!=
(const ProteinIdentification &rhs) const
ProteinIdentification
OpenMS::MetaInfoInterface::operator!=
(const MetaInfoInterface &rhs) const
MetaInfoInterface
operator=
(const ProteinIdentification &source)
ProteinIdentification
OpenMS::MetaInfoInterface::operator=
(const MetaInfoInterface &rhs)
MetaInfoInterface
operator==
(const ProteinIdentification &rhs) const
ProteinIdentification
OpenMS::MetaInfoInterface::operator==
(const MetaInfoInterface &rhs) const
MetaInfoInterface
PeakMassType
enum name
ProteinIdentification
protein_groups_
ProteinIdentification
protected
protein_hits_
ProteinIdentification
protected
protein_score_type_
ProteinIdentification
protected
protein_significance_threshold_
ProteinIdentification
protected
ProteinIdentification
()
ProteinIdentification
ProteinIdentification
(const ProteinIdentification &source)
ProteinIdentification
removeMetaValue
(const String &name)
MetaInfoInterface
removeMetaValue
(UInt index)
MetaInfoInterface
search_engine_
ProteinIdentification
protected
search_engine_version_
ProteinIdentification
protected
search_parameters_
ProteinIdentification
protected
setDateTime
(const DateTime &date)
ProteinIdentification
setHigherScoreBetter
(bool higher_is_better)
ProteinIdentification
setHits
(const std::vector< ProteinHit > &hits)
ProteinIdentification
setIdentifier
(const String &id)
ProteinIdentification
setMetaValue
(const String &name, const DataValue &value)
MetaInfoInterface
setMetaValue
(UInt index, const DataValue &value)
MetaInfoInterface
setPrimaryMSRunPath
(const StringList &s)
ProteinIdentification
setScoreType
(const String &type)
ProteinIdentification
setSearchEngine
(const String &search_engine)
ProteinIdentification
setSearchEngineVersion
(const String &search_engine_version)
ProteinIdentification
setSearchParameters
(const SearchParameters &search_parameters)
ProteinIdentification
setSignificanceThreshold
(double value)
ProteinIdentification
SIZE_OF_PEAKMASSTYPE
enum value
ProteinIdentification
sort
()
ProteinIdentification
~MetaInfoInterface
()
MetaInfoInterface
~ProteinIdentification
()
ProteinIdentification
virtual
OpenMS / TOPP release 2.3.0
Documentation generated on Tue Jan 9 2018 18:22:12 using doxygen 1.8.13