action_mode_ | SpectrumCanvas | protected |
actionModeChange() | SpectrumCanvas | signal |
ActionModes enum name | SpectrumCanvas | |
activateLayer(Size layer_index) | Spectrum2DCanvas | slot |
activeLayerIndex() const | SpectrumCanvas | |
adaptPenScaling_(double ratio_data2pixel, double &pen_size) const | Spectrum2DCanvas | protected |
addDataProcessing_(PeakMap &map, DataProcessing::ProcessingAction action) const | SpectrumCanvas | inlineprotected |
addLayer(ExperimentSharedPtrType map, const String &filename="") | SpectrumCanvas | |
addLayer(FeatureMapSharedPtrType map, const String &filename="") | SpectrumCanvas | |
addLayer(ConsensusMapSharedPtrType map, const String &filename="") | SpectrumCanvas | |
addLayer(std::vector< PeptideIdentification > &peptides, const String &filename="") | SpectrumCanvas | |
adjustBuffer_() | SpectrumCanvas | protected |
AM_MEASURE enum value | SpectrumCanvas | |
AM_TRANSLATE enum value | SpectrumCanvas | |
AM_ZOOM enum value | SpectrumCanvas | |
AreaType typedef | SpectrumCanvas | |
buffer_ | SpectrumCanvas | protected |
canvas_coverage_min_ | Spectrum2DCanvas | protected |
changeLayerFilterState(Size i, bool b) | SpectrumCanvas | slot |
changeLegendVisibility() | SpectrumCanvas | signal |
changeVisibility(Size i, bool b) | SpectrumCanvas | slot |
changeVisibleArea_(const AreaType &new_area, bool repaint=true, bool add_to_stack=false) | SpectrumCanvas | protectedvirtual |
check_defaults_ | DefaultParamHandler | protected |
collectFragmentScansInArea(double rt_min, double rt_max, double mz_min, double mz_max, QAction *a, QMenu *msn_scans, QMenu *msn_meta) | Spectrum2DCanvas | protected |
ConsensusMapSharedPtrType typedef | SpectrumCanvas | |
ConsensusMapType typedef | SpectrumCanvas | |
context_add_ | SpectrumCanvas | protected |
contextMenuEvent(QContextMenuEvent *e) | Spectrum2DCanvas | protected |
current_layer_ | SpectrumCanvas | protected |
currentLayerParametersChanged_() | Spectrum2DCanvas | protectedslot |
currentPeakData_() | SpectrumCanvas | inlineprotected |
dataToWidget_(double x, double y, QPoint &point) | Spectrum2DCanvas | inlineprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
drawCoordinates_(QPainter &painter, const PeakIndex &peak) | Spectrum2DCanvas | protected |
drawDeltas_(QPainter &painter, const PeakIndex &start, const PeakIndex &end) | Spectrum2DCanvas | protected |
drawText_(QPainter &painter, QStringList text) | SpectrumCanvas | protected |
enterEvent(QEvent *e) | SpectrumCanvas | protected |
error_name_ | DefaultParamHandler | protected |
ExperimentSharedPtrType typedef | SpectrumCanvas | |
ExperimentType typedef | SpectrumCanvas | |
FeatureMapSharedPtrType typedef | SpectrumCanvas | |
FeatureMapType typedef | SpectrumCanvas | |
FeatureType typedef | SpectrumCanvas | |
findNearestPeak_(const QPoint &pos) | Spectrum2DCanvas | protected |
finishAdding_() | Spectrum2DCanvas | protectedvirtual |
finishContextMenu_(QMenu *context_menu, QMenu *settings_menu) | Spectrum2DCanvas | protected |
focusOutEvent(QFocusEvent *e) | SpectrumCanvas | protected |
getActionMode() const | SpectrumCanvas | inline |
getCurrentLayer() const | SpectrumCanvas | inline |
getCurrentLayer() | SpectrumCanvas | inline |
getCurrentLayer_() | SpectrumCanvas | inlineprotected |
getCurrentLayerIndex() const | SpectrumCanvas | inline |
getCurrentMaxIntensity() const | SpectrumCanvas | inline |
getCurrentMinIntensity() const | SpectrumCanvas | inline |
getDataRange() | SpectrumCanvas | |
getDefaults() const | DefaultParamHandler | |
getIdentificationMZ_(const Size layer_index, const PeptideIdentification &peptide) const | SpectrumCanvas | protected |
getIntensityMode() const | SpectrumCanvas | inline |
getLayer(Size index) const | SpectrumCanvas | inline |
getLayer_(Size index) | SpectrumCanvas | inlineprotected |
getLayerCount() const | SpectrumCanvas | inline |
getLayerFlag(LayerData::Flags f) const | SpectrumCanvas | inline |
getLayerFlag(Size layer, LayerData::Flags f) const | SpectrumCanvas | inline |
getLayerName(Size i) | SpectrumCanvas | |
getMaxIntensity(Size index) const | SpectrumCanvas | inline |
getMinIntensity(Size index) const | SpectrumCanvas | inline |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getPercentageFactor() | SpectrumCanvas | |
getSnapFactor() | SpectrumCanvas | |
getSpectrumWidget() const | SpectrumCanvas | inline |
getSubsections() const | DefaultParamHandler | |
getVisibleArea() const | SpectrumCanvas | inline |
getVisibleConsensusData(ConsensusMapType &map) const | SpectrumCanvas | slot |
getVisibleFeatureData(FeatureMapType &map) const | SpectrumCanvas | slot |
getVisibleIdentifications(std::vector< PeptideIdentification > &peptides) const | SpectrumCanvas | slot |
getVisiblePeakData(ExperimentType &map) const | SpectrumCanvas | slot |
gridLinesShown() const | SpectrumCanvas | inline |
heightColor_(float val, const MultiGradient &gradient, double snap_factor) | Spectrum2DCanvas | inlineprotected |
highlightPeak_(QPainter &p, const PeakIndex &peak) | Spectrum2DCanvas | protected |
horizontalScrollBarChange(int value) | Spectrum2DCanvas | virtualslot |
IM_LOG enum value | SpectrumCanvas | |
IM_NONE enum value | SpectrumCanvas | |
IM_PERCENTAGE enum value | SpectrumCanvas | |
IM_SNAP enum value | SpectrumCanvas | |
intensity_mode_ | SpectrumCanvas | protected |
intensityModeChange_() | Spectrum2DCanvas | protectedvirtual |
IntensityModes enum name | SpectrumCanvas | |
isConsensusFeatureVisible_(const ConsensusFeature &ce, Size layer_index) | Spectrum2DCanvas | protected |
isMzToXAxis() | SpectrumCanvas | inline |
keyPressEvent(QKeyEvent *e) | Spectrum2DCanvas | protected |
keyReleaseEvent(QKeyEvent *e) | Spectrum2DCanvas | protected |
last_mouse_pos_ | SpectrumCanvas | protected |
layerActivated(QWidget *w) | SpectrumCanvas | signal |
layerModficationChange(Size layer, bool modified) | SpectrumCanvas | signal |
layers_ | SpectrumCanvas | protected |
layerZoomChanged(QWidget *w) | SpectrumCanvas | signal |
leaveEvent(QEvent *e) | SpectrumCanvas | protected |
linear_gradient_ | Spectrum2DCanvas | protected |
measurement_start_ | Spectrum2DCanvas | protected |
mergeIntoLayer(Size i, FeatureMapSharedPtrType map) | Spectrum2DCanvas | |
mergeIntoLayer(Size i, ConsensusMapSharedPtrType map) | Spectrum2DCanvas | |
mergeIntoLayer(Size i, std::vector< PeptideIdentification > &peptides) | Spectrum2DCanvas | |
modificationStatus_(Size layer_index, bool modified) | SpectrumCanvas | protected |
mouseDoubleClickEvent(QMouseEvent *e) | Spectrum2DCanvas | protected |
mouseMoveEvent(QMouseEvent *e) | Spectrum2DCanvas | protected |
mousePressEvent(QMouseEvent *e) | Spectrum2DCanvas | protected |
mouseReleaseEvent(QMouseEvent *e) | Spectrum2DCanvas | protected |
mz_to_x_axis_ | SpectrumCanvas | protected |
mzToXAxis(bool mz_to_x_axis) | SpectrumCanvas | |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
overall_data_range_ | SpectrumCanvas | protected |
paintAllIntensities_(Size layer_index, double pen_width, QPainter &painter) | Spectrum2DCanvas | protected |
paintConsensusElement_(Size layer_index, const ConsensusFeature &cf, QPainter &p, bool use_buffer) | Spectrum2DCanvas | protected |
paintConsensusElements_(Size layer_index, QPainter &p) | Spectrum2DCanvas | protected |
paintConvexHulls_(const std::vector< ConvexHull2D > &hulls, bool hasIdentifications, QPainter &p) | Spectrum2DCanvas | protected |
paintDots_(Size layer_index, QPainter &p) | Spectrum2DCanvas | protected |
paintEvent(QPaintEvent *e) | Spectrum2DCanvas | protected |
paintFeatureConvexHulls_(Size layer_index, QPainter &p) | Spectrum2DCanvas | protected |
paintFeatureData_(Size layer_index, QPainter &p) | Spectrum2DCanvas | protected |
paintGridLines_(QPainter &painter) | SpectrumCanvas | protectedvirtual |
paintIcon_(const QPoint &pos, const QRgb &color, const String &icon, Size s, QPainter &p) const | Spectrum2DCanvas | protected |
paintIdentifications_(Size layer_index, QPainter &p) | Spectrum2DCanvas | protected |
paintMaximumIntensities_(Size layer_index, Size rt_pixel_count, Size mz_pixel_count, QPainter &p) | Spectrum2DCanvas | protected |
paintPrecursorPeaks_(Size layer_index, QPainter &painter) | Spectrum2DCanvas | protected |
paintTraceConvexHulls_(Size layer_index, QPainter &p) | Spectrum2DCanvas | protected |
param_ | DefaultParamHandler | protected |
PeakType typedef | SpectrumCanvas | |
pen_size_max_ | Spectrum2DCanvas | protected |
pen_size_min_ | Spectrum2DCanvas | protected |
percentage_factor_ | SpectrumCanvas | protected |
PointType typedef | SpectrumCanvas | |
precalculatedColorIndex_(float val, const MultiGradient &gradient, double snap_factor) | Spectrum2DCanvas | inlineprotected |
preferencesChange() | SpectrumCanvas | signal |
projection_mz_ | Spectrum2DCanvas | protected |
projection_rt_ | Spectrum2DCanvas | protected |
recalculateAxes() | SpectrumCanvas | signal |
recalculateCurrentLayerDotGradient() | Spectrum2DCanvas | |
recalculateDotGradient_(Size layer) | Spectrum2DCanvas | protected |
recalculateRanges_(UInt mz_dim, UInt rt_dim, UInt it_dim) | SpectrumCanvas | protected |
recalculateSnapFactor_() | Spectrum2DCanvas | protectedvirtual |
removeLayer(Size layer_index) | Spectrum2DCanvas | slot |
resetZoom(bool repaint=true) | SpectrumCanvas | slot |
resizeEvent(QResizeEvent *e) | SpectrumCanvas | protected |
rubber_band_ | SpectrumCanvas | protected |
saveCurrentLayer(bool visible) | Spectrum2DCanvas | virtual |
selected_peak_ | Spectrum2DCanvas | protected |
sendCursorStatus(double mz=-1.0, double rt=-1.0) | SpectrumCanvas | signal |
sendStatusMessage(std::string message, OpenMS::UInt time) | SpectrumCanvas | signal |
setAdditionalContextMenu(QMenu *menu) | SpectrumCanvas | slot |
setCurrentLayerParameters(const Param ¶m) | SpectrumCanvas | inline |
setFilters(const DataFilters &filters) | SpectrumCanvas | virtual |
setIntensityMode(IntensityModes mod) | SpectrumCanvas | inline |
setLabel(LayerData::LabelType label) | SpectrumCanvas | inline |
setLayerFlag(LayerData::Flags f, bool value) | SpectrumCanvas | inline |
setLayerFlag(Size layer, LayerData::Flags f, bool value) | SpectrumCanvas | inline |
setLayerName(Size i, const String &name) | SpectrumCanvas | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setSpectrumWidget(SpectrumWidget *widget) | SpectrumCanvas | inline |
setVisibleArea(AreaType area) | SpectrumCanvas | slot |
show_grid_ | SpectrumCanvas | protected |
show_timing_ | SpectrumCanvas | protected |
showCurrentLayerPreferences() | Spectrum2DCanvas | virtual |
showCurrentPeaksAs3D() | Spectrum2DCanvas | signal |
showGridLines(bool show) | SpectrumCanvas | slot |
showMetaData(bool modifiable=false, Int index=-1) | SpectrumCanvas | virtual |
showProjectionHorizontal(ExperimentSharedPtrType) | Spectrum2DCanvas | signal |
showProjectionInfo(int, double, double) | Spectrum2DCanvas | signal |
showProjectionVertical(ExperimentSharedPtrType) | Spectrum2DCanvas | signal |
showSpectrumAs1D(int index) | Spectrum2DCanvas | signal |
showSpectrumAs1D(std::vector< int, std::allocator< int > > indices) | Spectrum2DCanvas | signal |
snap_factors_ | SpectrumCanvas | protected |
Spectrum2DCanvas(const Param &preferences, QWidget *parent=0) | Spectrum2DCanvas | |
Spectrum2DCanvas() | Spectrum2DCanvas | private |
spectrum_widget_ | SpectrumCanvas | protected |
SpectrumCanvas(const Param &preferences, QWidget *parent=0) | SpectrumCanvas | |
SpectrumConstIteratorType typedef | SpectrumCanvas | |
SpectrumType typedef | SpectrumCanvas | |
subsections_ | DefaultParamHandler | protected |
toggleProjections() | Spectrum2DCanvas | signal |
translateBackward_() | Spectrum2DCanvas | protectedvirtual |
translateForward_() | Spectrum2DCanvas | protectedvirtual |
translateLeft_(Qt::KeyboardModifiers m) | Spectrum2DCanvas | protectedvirtual |
translateRight_(Qt::KeyboardModifiers m) | Spectrum2DCanvas | protectedvirtual |
translateVisibleArea_(double mzShiftRel, double rtShiftRel) | Spectrum2DCanvas | protectedvirtual |
update_(const char *caller_name) | SpectrumCanvas | protectedvirtual |
update_buffer_ | SpectrumCanvas | protected |
updateCursor_() | SpectrumCanvas | protectedslot |
updateHScrollbar(float, float, float, float) | SpectrumCanvas | signal |
updateLayer(Size i) | Spectrum2DCanvas | virtualslot |
updateMembers_() | DefaultParamHandler | protectedvirtual |
updateProjections() | Spectrum2DCanvas | slot |
updateScrollbars_() | Spectrum2DCanvas | protectedvirtual |
updateVScrollbar(float, float, float, float) | SpectrumCanvas | signal |
verticalScrollBarChange(int value) | Spectrum2DCanvas | virtualslot |
visible_area_ | SpectrumCanvas | protected |
visibleAreaChanged(DRange< 2 > area) | SpectrumCanvas | signal |
warn_empty_defaults_ | DefaultParamHandler | protected |
wheelEvent(QWheelEvent *e) | SpectrumCanvas | protected |
widgetToData_(double x, double y) | SpectrumCanvas | inlineprotected |
widgetToData_(const QPoint &pos) | SpectrumCanvas | inlineprotected |
zoom_(int x, int y, bool zoom_in) | SpectrumCanvas | protectedvirtual |
zoom_pos_ | SpectrumCanvas | protected |
zoom_stack_ | SpectrumCanvas | protected |
zoomAdd_(const AreaType &area) | SpectrumCanvas | protected |
zoomBack_() | SpectrumCanvas | protected |
zoomClear_() | SpectrumCanvas | protected |
zoomForward_() | SpectrumCanvas | protectedvirtual |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~Spectrum2DCanvas() | Spectrum2DCanvas | |
~SpectrumCanvas() | SpectrumCanvas | virtual |