TheoreticalSpectrumGeneratorXLMS Member List

This is the complete list of members for TheoreticalSpectrumGeneratorXLMS, including all inherited members.

a_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
add_a_ions_	TheoreticalSpectrumGeneratorXLMS	protected
add_abundant_immonium_ions_	TheoreticalSpectrumGeneratorXLMS	protected
add_b_ions_	TheoreticalSpectrumGeneratorXLMS	protected
add_c_ions_	TheoreticalSpectrumGeneratorXLMS	protected
add_first_prefix_ion_	TheoreticalSpectrumGeneratorXLMS	protected
add_isotopes_	TheoreticalSpectrumGeneratorXLMS	protected
add_losses_	TheoreticalSpectrumGeneratorXLMS	protected
add_metainfo_	TheoreticalSpectrumGeneratorXLMS	protected
add_precursor_peaks_	TheoreticalSpectrumGeneratorXLMS	protected
add_x_ions_	TheoreticalSpectrumGeneratorXLMS	protected
add_y_ions_	TheoreticalSpectrumGeneratorXLMS	protected
add_z_ions_	TheoreticalSpectrumGeneratorXLMS	protected
addCommonPeaks_(PeakSpectrum &spectrum, DataArrays::IntegerDataArray &charges, DataArrays::StringDataArray &ion_names, AASequence peptide, Size link_pos, bool frag_alpha, Residue::ResidueType res_type, int charge=1, Size link_pos_2=0) const	TheoreticalSpectrumGeneratorXLMS	protectedvirtual
addPeak_(PeakSpectrum &spectrum, DataArrays::IntegerDataArray &charges, DataArrays::StringDataArray &ion_names, double pos, double intensity, Residue::ResidueType res_type, Size ion_index, int charge, String ion_type) const	TheoreticalSpectrumGeneratorXLMS	protected
addXLinkIonPeaks_(PeakSpectrum &spectrum, DataArrays::IntegerDataArray &charges, DataArrays::StringDataArray &ion_names, AASequence peptide, Size link_pos, double precursor_mass, bool frag_alpha, Residue::ResidueType res_type, int charge, Size link_pos_2=0) const	TheoreticalSpectrumGeneratorXLMS	protectedvirtual
b_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
c_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getCommonIonSpectrum(PeakSpectrum &spectrum, AASequence peptide, Size link_pos, bool frag_alpha, int charge=1, Size link_pos_2=0) const	TheoreticalSpectrumGeneratorXLMS	virtual
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
getXLinkIonSpectrum(PeakSpectrum &spectrum, AASequence peptide, Size link_pos, double precursor_mass, bool frag_alpha, int mincharge, int maxcharge, Size link_pos_2=0) const	TheoreticalSpectrumGeneratorXLMS	virtual
max_isotope_	TheoreticalSpectrumGeneratorXLMS	protected
multiple_fragmentation_mode_	TheoreticalSpectrumGeneratorXLMS	protected
operator=(const TheoreticalSpectrumGeneratorXLMS &tsg)	TheoreticalSpectrumGeneratorXLMS
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
pre_int_	TheoreticalSpectrumGeneratorXLMS	protected
pre_int_H2O_	TheoreticalSpectrumGeneratorXLMS	protected
pre_int_NH3_	TheoreticalSpectrumGeneratorXLMS	protected
rel_loss_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
residueTypeToIonLetter_(Residue::ResidueType res_type) const	TheoreticalSpectrumGeneratorXLMS	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
TheoreticalSpectrumGeneratorXLMS()	TheoreticalSpectrumGeneratorXLMS
TheoreticalSpectrumGeneratorXLMS(const TheoreticalSpectrumGeneratorXLMS &source)	TheoreticalSpectrumGeneratorXLMS
updateMembers_()	TheoreticalSpectrumGeneratorXLMS	virtual
warn_empty_defaults_	DefaultParamHandler	protected
x_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
y_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
z_intensity_	TheoreticalSpectrumGeneratorXLMS	protected
~DefaultParamHandler()	DefaultParamHandler	virtual
~TheoreticalSpectrumGeneratorXLMS()	TheoreticalSpectrumGeneratorXLMS	virtual