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Chemistry

Classes

class  AAIndex
 Representation of selected AAIndex properties. More...
 
class  AASequence
 Representation of a peptide/protein sequence. More...
 
class  Element
 Representation of an element. More...
 
class  ElementDB
 Stores elements. More...
 
class  EmpiricalFormula
 Representation of an empirical formula. More...
 
class  EnzymaticDigestion
 Class for the enzymatic digestion of proteins. More...
 
class  EnzymaticDigestionLogModel
 Class for the Log L model of enzymatic digestion of proteins. More...
 
class  Enzyme
 Representation of an enzyme. More...
 
class  EnzymesDB
 enzyme database which holds enzymes More...
 
class  IsotopeDistribution
 Isotope distribution class. More...
 
class  ModificationDefinition
 Representation of modification definition. More...
 
class  ModificationDefinitionsSet
 Representation of a set of modification definitions. More...
 
class  ModificationsDB
 database which holds all residue modifications from UniMod More...
 
class  Residue
 Representation of a residue. More...
 
class  ResidueDB
 residue data base which holds residues More...
 
class  SpectrumAnnotator
 Annotates spectra from identifications and theoretical spectra or identifications from spectra and theoretical spectra matching with various options. More...
 
class  SvmTheoreticalSpectrumGenerator
 Simulates MS2 spectra with support vector machines. More...
 
class  SvmTheoreticalSpectrumGeneratorSet
 Loads SvmTheoreticalSpectrumGenerator instances for different charges. More...
 
class  SvmTheoreticalSpectrumGeneratorTrainer
 Train SVM models that are used by SvmTheoreticalSpectrumGenerator. More...
 
class  TheoreticalSpectrumGenerator
 Generates theoretical spectra with various options. More...
 
class  TheoreticalSpectrumGeneratorXLMS
 Generates theoretical spectra for cross-linked peptides. More...
 

Detailed Description


OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:06 using doxygen 1.8.13