MetaProSIP.cpp File Reference

#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/ModificationsDB.h>
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/CHEMISTRY/Element.h>
#include <OpenMS/CHEMISTRY/ElementDB.h>
#include <OpenMS/MATH/STATISTICS/StatisticFunctions.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h>
#include <OpenMS/MATH/MISC/NonNegativeLeastSquaresSolver.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/FORMAT/TextFile.h>
#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h>
#include <OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h>
#include <OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h>
#include <OpenMS/MATH/MISC/CubicSpline2d.h>
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h>
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h>
#include <OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h>
#include <OpenMS/SYSTEM/File.h>
#include <boost/math/distributions/normal.hpp>
#include <QtCore/QStringList>
#include <QtCore/QFile>
#include <QtCore/QDir>
#include <QtCore/QFileInfo>
#include <QtCore/QProcess>
#include <algorithm>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <map>
#include <cmath>

Classes
struct	RateScorePair
struct	SIPIncorporation
	datastructure for reporting an incorporation event More...
struct	SIPPeptide
	datastructure for reporting a peptide with one or more incorporation rates comparator for vectors of SIPPeptides based on their size. Used to sort by group size. More...
struct	SizeLess
struct	SequenceLess
struct	RIALess
class	MetaProSIPInterpolation
class	MetaProSIPClustering
class	MetaProSIPReporting
class	MetaProSIPDecomposition
class	MetaProSIPXICExtraction
class	RIntegration
class	TOPPMetaProSIP

Typedefs
typedef map< double, double >	MapRateToScoreType
typedef pair< double, vector< double > >	IsotopePattern
typedef vector< IsotopePattern >	IsotopePatterns

Functions
int	main (int argc, const char **argv)

Typedef Documentation

IsotopePattern

typedef pair<double, vector<double> > IsotopePattern

IsotopePatterns

typedef vector<IsotopePattern> IsotopePatterns

MapRateToScoreType

typedef map<double, double> MapRateToScoreType

Function Documentation

main()

int main	(	int	argc,
		const char **	argv
	)

References TOPPBase::main().