Representation of controlled vocabulary term list. More...

#include <OpenMS/METADATA/CVTermList.h>

Inheritance diagram for CVTermList:

Public Member Functions
	CVTermList ()
	Defaults constructor. More...

	CVTermList (const CVTermList &rhs)
	Copy constructor. More...

virtual	~CVTermList ()
	Destructor. More...

CVTermList &	operator= (const CVTermList &rhs)
	Assignment operator. More...

Accessors
void	setCVTerms (const std::vector< CVTerm > &terms)
	sets the CV terms More...

void	replaceCVTerm (const CVTerm &cv_term)
	replaces the specified CV term More...

void	replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession)
	replaces the specified CV terms using the given accession number More...

void	replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map)
	replaces all cv terms with a map (can be obtained via getCVTerms) More...

void	consumeCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map)
	merges the given map into the member map, no duplicate checking More...

const Map< String, std::vector< CVTerm > > &	getCVTerms () const
	returns the accession string of the term More...

void	addCVTerm (const CVTerm &term)
	adds a CV term More...

Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string (or DataValue::EMPTY if not found) More...

const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to an index (or DataValue::EMPTY if not found) More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Predicates
checks whether the spellings of the CV terms stored are correct corrects the CVTerm names, according to the loaded CV
Map< String, std::vector< CVTerm > >	cv_terms_

bool	operator== (const CVTermList &cv_term_list) const
	equality operator More...

bool	operator!= (const CVTermList &cv_term_list) const
	inequality operator More...

bool	hasCVTerm (const String &accession) const
	checks whether the term has a value More...

bool	empty () const
	return true if no terms are available More...

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Detailed Description

Representation of controlled vocabulary term list.

This class should be used to inherit from, to allow to add an arbitrary number of CV terms to the inherited classRepresentation of a CV term used by CVMappings

Constructor & Destructor Documentation

◆ CVTermList() [1/2]

CVTermList ( )

Defaults constructor.

◆ CVTermList() [2/2]

CVTermList ( const CVTermList & rhs )

Copy constructor.

◆ ~CVTermList()

virtual ~CVTermList ( )

virtual

Destructor.

Member Function Documentation

◆ addCVTerm()

void addCVTerm ( const CVTerm & term )

adds a CV term

◆ consumeCVTerms()

void consumeCVTerms ( const Map< String, std::vector< CVTerm > > & cv_term_map )

merges the given map into the member map, no duplicate checking

◆ empty()

bool empty ( ) const

return true if no terms are available

checks whether the stored terms fulfill a given CVMappingRule TODO : implement

◆ getCVTerms()

const Map<String, std::vector<CVTerm> >& getCVTerms ( ) const

returns the accession string of the term

◆ hasCVTerm()

bool hasCVTerm ( const String & accession ) const

checks whether the term has a value

◆ operator!=()

bool operator!= ( const CVTermList & cv_term_list ) const

inequality operator

◆ operator=()

CVTermList& operator= ( const CVTermList & rhs )

Assignment operator.

Referenced by Configuration::operator=(), Protein::operator=(), PeptideCompound::operator=(), Contact::operator=(), Publication::operator=(), Instrument::operator=(), and Prediction::operator=().

◆ operator==()

bool operator== ( const CVTermList & cv_term_list ) const

equality operator

Referenced by Protein::operator==(), PeptideCompound::operator==(), Contact::operator==(), Publication::operator==(), Instrument::operator==(), and Prediction::operator==().

◆ replaceCVTerm()

void replaceCVTerm ( const CVTerm & cv_term )

replaces the specified CV term

◆ replaceCVTerms() [1/2]

void replaceCVTerms	(	const std::vector< CVTerm > &	cv_terms,
		const String &	accession
	)

replaces the specified CV terms using the given accession number

◆ replaceCVTerms() [2/2]

void replaceCVTerms ( const Map< String, std::vector< CVTerm > > & cv_term_map )

replaces all cv terms with a map (can be obtained via getCVTerms)

◆ setCVTerms()

void setCVTerms ( const std::vector< CVTerm > & terms )

sets the CV terms

Member Data Documentation

◆ cv_terms_

Map<String, std::vector<CVTerm> > cv_terms_

protected

Public Member Functions

Predicates

Additional Inherited Members